Mercurial > repos > charles_s_test > seqsero2
diff libs/BWA_analysis_O_new_dependent.py @ 11:b4484db557ab draft
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
| author | charles_s_test |
|---|---|
| date | Wed, 29 Nov 2017 12:46:19 -0500 |
| parents | 53efef402c51 |
| children |
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--- a/libs/BWA_analysis_O_new_dependent.py Wed Nov 29 08:34:19 2017 -0500 +++ b/libs/BWA_analysis_O_new_dependent.py Wed Nov 29 12:46:19 2017 -0500 @@ -1,4 +1,4 @@ -#!/usr/bin/env python +#!/usr/bin/env python2.7 #tyr_of_O2_O9.fasta should be in the same directory, in it, O9 should be first then O2 import os @@ -65,7 +65,7 @@ rev_fq=re_core_id+".fastq" dirpath = os.path.abspath(os.path.dirname(os.path.realpath(__file__)))#######03152016 print "check fastq id and make them in accordance with each other...please wait..." - os.system("python "+dirpath+"/compare_and_change_two_fastq_id.py "+for_fq+" "+rev_fq)#######03152016 + os.system("python2.7 "+dirpath+"/compare_and_change_two_fastq_id.py "+for_fq+" "+rev_fq)#######03152016 for_sai=for_core_id+".sai" rev_sai=re_core_id+".sai" sam=for_core_id+".sam"