Mercurial > repos > charles_s_test > seqsero2

comparison libs/deletion_compare.py @ 10:53efef402c51 draft

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planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
author charles_s_test
date Wed, 29 Nov 2017 08:34:19 -0500
parents 3d6680af0bec
children
comparison
equal deleted inserted replaced
9:acc5cd06a36a 10:53efef402c51
118 O9_bigger+=1 118 O9_bigger+=1
119 if O9_score<O2_score: 119 if O9_score<O2_score:
120 O2_bigger+=1 120 O2_bigger+=1
121 except: 121 except:
122 continue 122 continue
123 print("$$$Genome:",sra_name) 123 print "$$$Genome:",sra_name
124 if O9_bigger>O2_bigger: 124 if O9_bigger>O2_bigger:
125 print("$$$Typhimurium") 125 print "$$$Typhimurium"
126 elif O9_bigger<O2_bigger: 126 elif O9_bigger<O2_bigger:
127 print("$$$Typhimurium_O5-") 127 print "$$$Typhimurium_O5-"
128 else: 128 else:
129 print("$$$Typhimurium, even no 7 bases difference") 129 print "$$$Typhimurium, even no 7 bases difference"
130 print("O-4 number is:",O9_bigger) 130 print "O-4 number is:",O9_bigger
131 print("O-4_5- number is:",O2_bigger) 131 print "O-4_5- number is:",O2_bigger
132 os.system("rm "+sam+"_title.txt")###01/28/2015 132 os.system("rm "+sam+"_title.txt")###01/28/2015
133 os.system("rm "+sam+"_seq.txt")###01/28/2015 133 os.system("rm "+sam+"_seq.txt")###01/28/2015
134 os.system("rm "+sam+".fasta")###01/28/2015 134 os.system("rm "+sam+".fasta")###01/28/2015
135 os.system("rm "+database2+"_db.*")###01/28/2015 135 os.system("rm "+database2+"_db.*")###01/28/2015
136 os.system("rm "+sam+"_vs_O45.xml")###01/28/2015 136 os.system("rm "+sam+"_vs_O45.xml")###01/28/2015