annotate psql_test.py @ 0:8db411fab3e1 draft

planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
author charles_s_test
date Thu, 19 Oct 2017 18:20:46 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
1 import psycopg2, os
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
2
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
3 os.system('source /nfs/sw/apps/galaxy-dev/galaxy/.venv/bin/activate')
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
4
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
5 connection = psycopg2.connect(database="galaxy", user="galaxy", host="galaxydev.cvkyaz9id4ml.us-east-1.rds.amazonaws.com", password="cF$cl0udh9c", port="5432")
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
6 print "monkey made a connection!"
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
7
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
8 worker = connection.cursor()
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
9 worker.execute('SELECT name FROM library_dataset_dataset_association WHERE dataset_id = 4;')
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
10 result = worker.fetchall()
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
11 print result, '4'
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
12
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
13 worker = connection.cursor()
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
14 worker.execute('SELECT name FROM library_dataset_dataset_association WHERE dataset_id = 10;')
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
15 result = worker.fetchall()
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
16 print result, '10'
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
17
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
18 worker = connection.cursor()
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
19 worker.execute('SELECT name FROM library_dataset_dataset_association WHERE dataset_id = 11;')
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
20 result = worker.fetchall()
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
21 print result, '11'
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
22
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
23 worker = connection.cursor()
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
24 worker.execute('SELECT name FROM library_dataset_dataset_association WHERE dataset_id = 18;')
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
25 result = worker.fetchall()
8db411fab3e1 planemo upload commit 844a891e4eaf732830043204ac636907eefb011d-dirty
charles_s_test
parents:
diff changeset
26 print result, '18'