Mercurial > repos > cathywise > truststore_browse

changeset 22:fb915c3aefb2

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
.fa => fasta
author Wise, Catherine (Digital, Acton) <Catherine.Wise@csiro.au>
date Thu, 25 Jun 2015 14:05:33 +1000
parents 4819fbb59766
children 194cf7e7e936
files TrustStoreGalaxyBrowse.py
diffstat 1 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/TrustStoreGalaxyBrowse.py	Thu Jun 25 13:18:03 2015 +1000
+++ b/TrustStoreGalaxyBrowse.py	Thu Jun 25 14:05:33 2015 +1000
@@ -96,12 +96,15 @@
     filename = "%s_%s_%s_%s_%s" % ('primary', id, name, 'visible', file_type)
     return filename
 
-def metadata_to_json(dataset_id, filename, name, extesion, ds_type='dataset', primary=False):
+def metadata_to_json(dataset_id, filename, name, extension, ds_type='dataset', primary=False):
     """ Return line separated JSON
     From https://github.com/mdshw5/galaxy-json-data-source/blob/master/json_data_source.py
     """
+    ext = extension
+    if ext == 'fa':
+        ext = 'fasta'
     meta_dict = dict(type=ds_type,
-                     ext=extesion,
+                     ext=extension,
                      filename=filename,
                      name=name,
                      metadata={})