Mercurial > repos > brenninc > test_r_cairo_27aug2015
changeset 37:f37472daa3a8 draft
Uploaded
| author | brenninc |
|---|---|
| date | Fri, 09 Oct 2015 09:26:05 -0400 |
| parents | 38b5b5e6905a |
| children | 40c478294c52 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 36 insertions(+), 50 deletions(-) [+] |
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--- a/tool_dependencies.xml Fri Oct 09 09:25:03 2015 -0400 +++ b/tool_dependencies.xml Fri Oct 09 09:26:05 2015 -0400 @@ -1,9 +1,5 @@ <?xml version="1.0"?> <tool_dependency> - <package name="R" version="3.2.1"> - <install version="1.0"> - <actions> - <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz</action> <package name="atlas" version="3.10.2"> <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> @@ -28,7 +24,19 @@ <package name="fontconfig" version="2.11.1"> <repository changeset_revision="204a8c713d82" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> + <package name="libmxl2" version="2.9.1"> + <repository changeset_revision="df7589f53a88" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="R" version="3.2.1"> + <repository changeset_revision="c609d39e063f" name="brenninc_r_sept32105" owner="brenninc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="R_cairo" version="0.0.3"> + <install version="1.0"> + <actions> <action type="set_environment_for_install"> + <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="atlas" version="3.10.2" /> + </repository> <repository changeset_revision="caf1e20aac98" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="readline" version="6.3" /> </repository> @@ -50,53 +58,31 @@ <repository changeset_revision="204a8c713d82" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="fontconfig" version="2.11.1" /> </repository> - </action> - <action type="shell_command"> - export LDFLAGS="-L$LIBPNG_LIB_PATH -L$PNG_LIBS -L$NCURSES_LIB_PATH -L$READLINE_LIB_PATH" && - export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" && - export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" && - export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" && - export LDFLAGS="$LDFLAGS -Wl,-rpath,$LIBPNG_LIB_PATH" && - export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" && - export LDFLAGS="$LDFLAGS -Wl,-rpath,$FONTCONFIG_LIB_PATH" && - export LDFLAGS="$LDFLAGS -Wl,-rpath,$CAIRO_LIB_PATH" && - export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" && - export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" && - export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" && - ./configure --with-tcltk \ - --with-blas \ - --with-lapack \ - --with-readline \ - --with-cairo \ - --with-libpng \ - --without-x \ - --enable-R-shlib \ - --disable-R-framework \ - --libdir=$INSTALL_DIR/lib \ - --prefix=$INSTALL_DIR - </action> - <action type="make_install" /> - <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action> - <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action> - <action type="set_environment"> - <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable> - <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable> - <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable> - <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable> - <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable> - <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> - <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> - <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> - <environment_variable action="prepend_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> - <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - </action> + <repository changeset_revision="df7589f53a88" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="libmxl2" version="2.9.1" /> + </repository> + </action> + <action type="setup_r_environment"> + <repository changeset_revision="c609d39e063f" name="brenninc_r_sept32105" owner="brenninc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="R" version="3.2.1" /> + <!-- includes base, boot, + class, cluster, codetools, compiler, + datasets, + foreign, + graphics, grDevices, grid, + KernSmooth, + lattice, + MASS, Matrix, methods, mgcv, + nlme, nnet, + parallel, + rpart, + spatial, splines, stats, stats4, survival, + tcltk, tools, + utils--> + </repository> + <package>https://cran.r-project.org/src/contrib/Archive/Cairo/Cairo_1.5-8.tar.gz</package> + </action> </actions> </install> - <readme> - The precompiled versions of this package were built 2015-07-27. - R is a free software environment for statistical computing and graphics. - NOTE: See custom compilation options above. - </readme> </package> </tool_dependency>