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1 <?xml version="1.0"?>
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2 <tool_dependency>
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36
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3 <package name="R" version="3.2.1">
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24
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4 <install version="1.0">
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5 <actions>
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36
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6 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.2.1.tar.gz</action>
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7 <package name="atlas" version="3.10.2">
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8 <repository changeset_revision="86b7c19454fa" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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9 </package>
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10 <package name="readline" version="6.3">
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11 <repository changeset_revision="caf1e20aac98" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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12 </package>
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13 <package name="libpng" version="1.6.7">
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14 <repository changeset_revision="ac6ef08bf0e6" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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15 </package>
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16 <package name="cairo" version="1.14.2">
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17 <repository changeset_revision="7bd7b7f98a91" name="brenninc_cairo_4sept2015" owner="brenninc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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18 </package>
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19 <package name="pixman" version="0.32.6">
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20 <repository changeset_revision="2db67636b074" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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21 </package>
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22 <package name="freetype" version="2.5.2">
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23 <repository changeset_revision="2460955a5704" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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24 </package>
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25 <package name="ncurses" version="6.0">
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26 <repository changeset_revision="7fae9c4b2d10" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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27 </package>
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28 <package name="fontconfig" version="2.11.1">
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29 <repository changeset_revision="204a8c713d82" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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30 </package>
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31 <action type="set_environment_for_install">
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32 <repository changeset_revision="caf1e20aac98" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
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32
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33 <package name="readline" version="6.3" />
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34 </repository>
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35 <repository changeset_revision="ac6ef08bf0e6" name="package_libpng_1_6_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
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36 <package name="libpng" version="1.6.7" />
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37 </repository>
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36
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38 <repository changeset_revision="7bd7b7f98a91" name="brenninc_cairo_4sept2015" owner="brenninc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
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32
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39 <package name="cairo" version="1.14.2" />
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31
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40 </repository>
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32
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41 <repository changeset_revision="2db67636b074" name="package_pixman_0_32_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
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42 <package name="pixman" version="0.32.6" />
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43 </repository>
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36
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44 <repository changeset_revision="2460955a5704" name="package_freetype_2_5_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
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32
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45 <package name="freetype" version="2.5.2" />
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46 </repository>
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36
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47 <repository changeset_revision="7fae9c4b2d10" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
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32
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48 <package name="ncurses" version="6.0" />
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49 </repository>
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36
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50 <repository changeset_revision="204a8c713d82" name="package_fontconfig_2_11_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
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31
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51 <package name="fontconfig" version="2.11.1" />
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52 </repository>
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36
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53 </action>
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54 <action type="shell_command">
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55 export LDFLAGS="-L$LIBPNG_LIB_PATH -L$PNG_LIBS -L$NCURSES_LIB_PATH -L$READLINE_LIB_PATH" &&
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56 export LDFLAGS="$LDFLAGS -Wl,-rpath,$NCURSES_LIB_PATH" &&
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57 export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" &&
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58 export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" &&
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59 export LDFLAGS="$LDFLAGS -Wl,-rpath,$LIBPNG_LIB_PATH" &&
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60 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" &&
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61 export LDFLAGS="$LDFLAGS -Wl,-rpath,$FONTCONFIG_LIB_PATH" &&
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62 export LDFLAGS="$LDFLAGS -Wl,-rpath,$CAIRO_LIB_PATH" &&
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63 export CFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" &&
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64 export CXXFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" &&
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65 export CPPFLAGS="-I$PNG_INCLUDES -I$NCURSES_INCLUDE_PATH -I$READLINE_INCLUDE_PATH -I$LIBPNG_INCLUDE_PATH -I$FONTCONFIG_INCLUDE_PATH -I$CAIRO_INCLUDE_PATH" &&
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66 ./configure --with-tcltk \
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67 --with-blas \
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68 --with-lapack \
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69 --with-readline \
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70 --with-cairo \
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71 --with-libpng \
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72 --without-x \
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73 --enable-R-shlib \
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74 --disable-R-framework \
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75 --libdir=$INSTALL_DIR/lib \
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76 --prefix=$INSTALL_DIR
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77 </action>
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78 <action type="make_install" />
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79 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action>
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80 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action>
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81 <action type="set_environment">
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82 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable>
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83 <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable>
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84 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable>
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85 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable>
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86 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable>
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87 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
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88 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
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89 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
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90 <environment_variable action="prepend_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
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91 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
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92 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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93 </action>
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24
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94 </actions>
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95 </install>
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36
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96 <readme>
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97 The precompiled versions of this package were built 2015-07-27.
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98 R is a free software environment for statistical computing and graphics.
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99 NOTE: See custom compilation options above.
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100 </readme>
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24
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101 </package>
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102 </tool_dependency>
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