Mercurial > repos > boris > package_rpy2_2_2

changeset 10:fe06be027248 draft

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Deleted selected files
author boris
date Thu, 06 Jun 2013 15:26:45 -0400
parents d0b87be35e2c
children d77b02348ed8
files tool_dependencies.xml
diffstat 1 files changed, 0 insertions(+), 37 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jun 06 10:22:18 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,37 +0,0 @@
-<tool_dependency>
-    <package name="readline" version="6.2">
-        <repository changeset_revision="7c94649a1f86" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/"/>
-    </package>
-    <package name="R" version="2.15.0">
-        <repository changeset_revision="562ebf52a8fe" name="package_r_2_15" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/"/>
-    </package>
-    <package name="rpy2" version="2.2.6">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz</action>
-                <action type="set_environment_for_install">
-                    <repository changeset_revision="7c94649a1f86" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                        <package name="readline" version="6.2"/>
-                    </repository>
-                    <repository changeset_revision="562ebf52a8fe" name="package_r_2_15" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                        <package name="R" version="2.15.0"/>
-                    </repository>
-                </action>
-                <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
-                <action type="set_environment">
-                    <environment_variable name="R_HOME" action="set_to">$ENV[R_HOME]</environment_variable>
-                    <environment_variable name="R_LIBS" action="set_to">$ENV[R_LIBS]</environment_variable>
-                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>In order to upgrade one will have to first remove older installed rpy2 packages then and only then install the recent version of rpy2 wished.
-                Python version 2.5 or greater, as well as R-2.8.0 or greater are required.
-                When compiling R from source, do not forget to specify –enable-R-shlib at the ./configure step.
-                gcc-4.4 is used for compiling the C parts on Linux.
-                If installing from a linux distribution, the Python-dev package will obviously be required to compile rpy2
-                On OS X, the XCode tools will be required in order to compile rpy2.</readme>
-    </package>
-</tool_dependency>
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