Mercurial > repos > boris > package_rpy2_2_2

changeset 15:bea6d7eeab36 draft

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Deleted hgweb.config
author boris
date Fri, 07 Jun 2013 13:29:33 -0400
parents 0d3cb422b8ae
children cc1d274bf155
files tool_dependencies.xml
diffstat 1 files changed, 0 insertions(+), 39 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Jun 07 12:37:20 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,39 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="readline" version="6.2">
-        <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-    <package name="R" version="2.15.0">
-        <repository changeset_revision="87a1a0aef849" name="package_r_2_15" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-    <package name="rpy2" version="2.2.6">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz</action>
-                <action type="set_environment_for_install">
-                    <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                        <package name="readline" version="6.2" />
-                    </repository>
-                    <repository changeset_revision="87a1a0aef849" name="package_r_2_15" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
-                        <package name="R" version="2.15.0" />
-                    </repository>
-                </action>
-                <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="shell_command">export R_HOME=$R_HOME &amp;&amp; export R_LIBS=$R_LIBS &amp;&amp;
-                                             export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
-                <action type="set_environment">
-                    <environment_variable action="set_to" name="R_HOME">$ENV[R_HOME]</environment_variable>
-                    <environment_variable action="set_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable>
-                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>In order to upgrade one will have to first remove older installed rpy2 packages then and only then install the recent version of rpy2 wished.
-                Python version 2.5 or greater, as well as R-2.8.0 or greater are required.
-                When compiling R from source, do not forget to specify –enable-R-shlib at the ./configure step.
-                gcc-4.4 is used for compiling the C parts on Linux.
-                If installing from a linux distribution, the Python-dev package will obviously be required to compile rpy2
-                On OS X, the XCode tools will be required in order to compile rpy2.</readme>
-    </package>
-</tool_dependency>