Mercurial > repos > blankenberg > package_pybamtools
changeset 1:03f1db7f814d
Add tool_dependencies.xml.
author | Daniel Blankenberg <dan@bx.psu.edu> |
---|---|
date | Tue, 14 May 2013 10:10:59 -0400 |
parents | db641a51dce6 |
children | 3b4a96996e8f |
files | tool_dependencies.xml |
diffstat | 1 files changed, 18 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue May 14 10:10:59 2013 -0400 @@ -0,0 +1,18 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="pyBamTools" version="0.0.1"> + <install version="1.0"> + <actions> + <action type="shell_command">hg clone -r 882432f4c0c1b2b3522aa9b69f3aa68b28e1f0c0 https://bitbucket.org/dan/pybamtools</action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --home $INSTALL_DIR</action> + <action type="set_environment"> + <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable> + </action> + </actions> + </install> + <readme> +Installs pyBamTools libraries. + </readme> + </package> +</tool_dependency>