Mercurial > repos > blankenberg > naive_variant_detector
changeset 12:7f654ba273cb
Update help text.
| author | Daniel Blankenberg <dan@bx.psu.edu> |
|---|---|
| date | Tue, 27 Aug 2013 13:17:27 -0400 |
| parents | 15493ebbc53b |
| children | 162baa0e4db4 |
| files | tools/naive_variant_detector.xml |
| diffstat | 1 files changed, 6 insertions(+), 0 deletions(-) [+] |
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--- a/tools/naive_variant_detector.xml Tue Aug 27 13:05:16 2013 -0400 +++ b/tools/naive_variant_detector.xml Tue Aug 27 13:17:27 2013 -0400 @@ -125,6 +125,12 @@ The output is in VCF format. +Example VCF output line, without reporting by strand: + ``chrM 16029 . T G,A,C . . AC=15,9,5;AF=0.00155311658729,0.000931869952371,0.000517705529095 GT:AC:AF:NC 0/0:15,9,5:0.00155311658729,0.000931869952371,0.000517705529095:A=9,C=5,T=9629,G=15,`` + +Example VCF output line, when reporting by strand: + ``chrM 16029 . T G,A,C . . AC=15,9,5;AF=0.00155311658729,0.000931869952371,0.000517705529095 GT:AC:AF:NC 0/0:15,9,5:0.00155311658729,0.000931869952371,0.000517705529095:+T=3972,-A=9,-C=5,-T=5657,-G=15,`` + **Options** Reference Genome: