Mercurial > repos > blankenberg > naive_variant_detector

changeset 4:1c23da12b768

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Remove test-data/ path from defined Tool tests.
author Daniel Blankenberg <dan@bx.psu.edu>
date Wed, 15 May 2013 09:37:01 -0400
parents b59e4da0cb70
children 4a67169be0ee
files tools/naive_variant_detector.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tools/naive_variant_detector.xml	Tue May 14 12:53:54 2013 -0400
+++ b/tools/naive_variant_detector.xml	Wed May 15 09:37:01 2013 -0400
@@ -129,8 +129,8 @@
   <tests>
       <test>
           <param name="reference_source_selector" value="history" />
-          <param name="input_bam" value="test-data/fake_phiX174_reads_1.bam" ftype="bam" /> 
-          <param name="ref_file" value="test-data/phiX174.fasta" ftype="fasta" />
+          <param name="input_bam" value="fake_phiX174_reads_1.bam" ftype="bam" /> 
+          <param name="ref_file" value="phiX174.fasta" ftype="fasta" />
           <param name="min_support_depth" value="0" />
           <param name="min_base_quality" value="" />
           <param name="min_mapping_quality" value="" />
@@ -138,7 +138,7 @@
           <param name="variants_only" value="False" />
           <param name="use_strand" value="False" />
           <param name="coverage_dtype" value="uint8" />
-          <output name="output_vcf" file="test-data/fake_phiX174_reads_1_test_out_1.vcf" compare="contains" />
+          <output name="output_vcf" file="fake_phiX174_reads_1_test_out_1.vcf" compare="contains" />
       </test>
   </tests>