Mercurial > repos > blankenberg > naive_variant_caller

changeset 3:2d7bf206123a draft

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planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/tools/naive_variant_caller commit 470c2ac7bfb061e09dfe88ea61d2b8b53d041413
author blankenberg
date Fri, 17 Feb 2017 11:36:17 -0500
parents f24d3b78f9bd
children ed9c6873c73c
files dependency_configs/tool_dependencies.xml tools/naive_variant_caller.xml
diffstat 2 files changed, 7 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/dependency_configs/tool_dependencies.xml	Thu Sep 17 13:28:03 2015 -0400
+++ b/dependency_configs/tool_dependencies.xml	Fri Feb 17 11:36:17 2017 -0500
@@ -4,9 +4,9 @@
         <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="pyBamParser" version="0.0.1">
-        <repository changeset_revision="25dda1db045d" name="package_pybamparser_0_0_1" owner="blankenberg" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="f0447bf3223c" name="package_pybamparser_0_0_1" owner="blankenberg" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="pyBamTools" version="0.0.2">
-        <repository changeset_revision="b9bb96e4c532" name="package_pybamtools_0_0_2" owner="blankenberg" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="ece4961bd67e" name="package_pybamtools_0_0_2" owner="blankenberg" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>
--- a/tools/naive_variant_caller.xml	Thu Sep 17 13:28:03 2015 -0400
+++ b/tools/naive_variant_caller.xml	Fri Feb 17 11:36:17 2017 -0500
@@ -199,11 +199,6 @@
         | uint64 | 18,446,744,073,709,551,615 |
         +--------+----------------------------+
 
-------
-
-**Citation**
-
-If you use this tool, please cite Blankenberg D, et al. *In preparation.*
 
   </help>
   <tests>
@@ -223,5 +218,9 @@
           <output name="output_vcf" file="fake_phiX174_reads_1_test_out_1.vcf" compare="contains" />
       </test>
   </tests>
-  
+
+  <citations>
+    <citation type="doi">10.1186/gb4161</citation>
+  </citations>
+
 </tool>