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annotate data_manager_conf.xml @ 6:ca8b3709309e

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Add abspath value translation to data_manager_conf.xml.
author Daniel Blankenberg <dan@bx.psu.edu>
date Tue, 04 Jun 2013 14:56:54 -0400
parents 6115872b2240
children
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6115872b2240 Add Fetch Genome / all_fasta.loc Data Manager.
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1 <?xml version="1.0"?>
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2 <data_managers>
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4 <data_manager tool_file="data_manager/data_manager_fetch_genome_all_fasta.xml" id="fetch_genome_all_fasta">
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5 <data_table name="all_fasta">
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6 <output>
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7 <column name="value" />
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8 <column name="dbkey" />
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9 <column name="name" />
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10 <column name="path" output_ref="out_file" >
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11 <move type="file">
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12 <source>${path}</source>
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13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/seq/${path}</target>
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14 </move>
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15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/seq/${path}</value_translation>
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16 <value_translation type="function">abspath</value_translation>
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17 </column>
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18 </output>
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19 </data_table>
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20 </data_manager>
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22 </data_managers>