Mercurial > repos > biomonika > test_dependency

changeset 1:6aeee4ee8cc8

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second
author biomonika <biomonika@psu.edu>
date Thu, 21 Aug 2014 21:39:03 -0400
parents 7112ee9a7ada
children 624dee89ea87
files bubu.txt test_dependency.sh test_dependency.xml
diffstat 3 files changed, 5 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bubu.txt	Thu Aug 21 21:39:03 2014 -0400
@@ -0,0 +1,1 @@
+Bububu!!! Cham cham.
\ No newline at end of file
--- a/test_dependency.sh	Thu Aug 21 21:22:28 2014 -0400
+++ b/test_dependency.sh	Thu Aug 21 21:39:03 2014 -0400
@@ -7,7 +7,7 @@
 
 echo "LINKYX_PATH: " $LINKYX_PATH
 
-cat ${LINKYX_PATH}/demo_files/reference.fasta >>$results
+cat ${LINKYX_PATH}/bubu.txt >>$results
 
 
 
--- a/test_dependency.xml	Thu Aug 21 21:22:28 2014 -0400
+++ b/test_dependency.xml	Thu Aug 21 21:39:03 2014 -0400
@@ -1,5 +1,8 @@
 <tool id="test_dependency" name="test_dependency">
       <description>Test toolshed dependency</description>
+        <requirements>
+            <requirement type="set_environment">LINKYX_PATH</requirement>
+        </requirements>
       <command interpreter="bash">test_dependency.sh $output $input1 $input2</command>
       <inputs>
         <param format="fastq" name="input1" type="data" label="Fake left reads"/>