Mercurial > repos > biomonika > test_dependency

changeset 13:0659a0a8e6fd

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d5
author biomonika <biomonika@psu.edu>
date Mon, 25 Aug 2014 14:50:27 -0400
parents 0f7ae03642e3
children 7558fc0db1cf
files test_dependency.xml tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/test_dependency.xml	Mon Aug 25 14:44:33 2014 -0400
+++ b/test_dependency.xml	Mon Aug 25 14:50:27 2014 -0400
@@ -2,6 +2,9 @@
       <description>Test toolshed dependency</description>
       <requirements>
         <requirement type="set_environment">LINKYX_PATH</requirement>
+        <requirement type="set_environment">SAMTOOLS</requirement>
+        <requirement type="package" version="0.1.19">samtools</requirement>
+      </requirements>
       </requirements>
       <command interpreter="bash">test_dependency.sh $output</command>
       <inputs>
--- a/tool_dependencies.xml	Mon Aug 25 14:44:33 2014 -0400
+++ b/tool_dependencies.xml	Mon Aug 25 14:50:27 2014 -0400
@@ -11,8 +11,6 @@
                 <action type="shell_command">make</action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
-                </action>
-                <action type="set_environment">
                     <environment_variable name="SAMTOOLS" action="set_to">$INSTALL_DIR</environment_variable>
                 </action>
             </actions>