Mercurial > repos > biomonika > test_dependency

annotate test_dependency.sh @ 17:5bd4a63cba10

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
d9
author biomonika <biomonika@psu.edu>
date Mon, 25 Aug 2014 15:15:17 -0400
parents 5573c2fa9824
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
65f07f51a1e4 Uploaded
biomonika
parents:
diff changeset
1 #!/bin/bash
65f07f51a1e4 Uploaded
biomonika
parents:
diff changeset
2
65f07f51a1e4 Uploaded
biomonika
parents:
diff changeset
3 results=$1 #X-linked candidates written here
65f07f51a1e4 Uploaded
biomonika
parents:
diff changeset
4
65f07f51a1e4 Uploaded
biomonika
parents:
diff changeset
5 echo "LINKYX_PATH: " $LINKYX_PATH
8
5573c2fa9824 full depend
biomonika <biomonika@psu.edu>
parents: 4
diff changeset
6 echo "SAMTOOLS: " $SAMTOOLS
4
65f07f51a1e4 Uploaded
biomonika
parents:
diff changeset
7
65f07f51a1e4 Uploaded
biomonika
parents:
diff changeset
8 perl ${LINKYX_PATH}/test.pl
65f07f51a1e4 Uploaded
biomonika
parents:
diff changeset
9
8
5573c2fa9824 full depend
biomonika <biomonika@psu.edu>
parents: 4
diff changeset
10 echo "LINKYX_PATH: " $LINKYX_PATH "SAMTOOLS: " $SAMTOOLS >>$results
4
65f07f51a1e4 Uploaded
biomonika
parents:
diff changeset
11
65f07f51a1e4 Uploaded
biomonika
parents:
diff changeset
12
65f07f51a1e4 Uploaded
biomonika
parents:
diff changeset
13