Mercurial > repos > biomonika > test_dependency

diff test_dependency.sh @ 8:5573c2fa9824

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full depend
author biomonika <biomonika@psu.edu>
date Mon, 25 Aug 2014 12:51:30 -0400
parents 65f07f51a1e4
children
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--- a/test_dependency.sh	Sun Aug 24 22:56:50 2014 -0400
+++ b/test_dependency.sh	Mon Aug 25 12:51:30 2014 -0400
@@ -2,14 +2,12 @@
 
 results=$1 #X-linked candidates written here
 
-fake_input1=${2}
-fake_input2=${3}
-
 echo "LINKYX_PATH: " $LINKYX_PATH
+echo "SAMTOOLS: " $SAMTOOLS
 
 perl ${LINKYX_PATH}/test.pl
 
-#cat ${LINKYX_PATH}/demo_files/reference.fasta >>$results
+echo "LINKYX_PATH: " $LINKYX_PATH "SAMTOOLS: " $SAMTOOLS >>$results