Mercurial > repos > biomonika > primer_tester

changeset 1:3a58793617ef draft default tip

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Uploaded
author biomonika
date Fri, 25 Jul 2014 17:11:18 -0400
parents 1e22519d75ac
children
files primer_tester.xml
diffstat 1 files changed, 25 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/primer_tester.xml	Fri Jul 25 17:11:18 2014 -0400
@@ -0,0 +1,25 @@
+<tool id="primer_tester" name="primer_tester">
+   2   <description>for each sequence in a file</description>
+   3   <command interpreter="perl">primer_tester.sh $input $output $input1 $input2 $input3</command>
+   4   <inputs>
+   5     <param format="tabular" name="input" type="data" label="Primers"/>
+         <param format="primersearch" name="input1" type="data" label="Data file 1"/>
+         <param format="primersearch" name="input2" type="data" label="Data file 2"/>
+         <param format="primersearch" name="input3" type="data" label="Data file 3"/>
+   6   </inputs>
+   7   <outputs>
+   8     <data format="tabular" name="output" />
+   9   </outputs>
+  10 
+  11   <tests>
+  12     <test>
+  13       <param name="input" value="primer_tester_content_input.fa"/>
+  14       <output name="out_file1" file="primersearch_results.txt"/>
+  15     </test>
+  16   </tests>
+  17 
+  18   <help>
+  19 This tool tests if primers are present in gorilla female or on human Y or chimp Y chromosome.
+  20   </help>
+  21 
+  22 </tool>
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