view primer_tester.xml @ 1:3a58793617ef draft default tip

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<tool id="primer_tester" name="primer_tester">
   2   <description>for each sequence in a file</description>
   3   <command interpreter="perl">primer_tester.sh $input $output $input1 $input2 $input3</command>
   4   <inputs>
   5     <param format="tabular" name="input" type="data" label="Primers"/>
         <param format="primersearch" name="input1" type="data" label="Data file 1"/>
         <param format="primersearch" name="input2" type="data" label="Data file 2"/>
         <param format="primersearch" name="input3" type="data" label="Data file 3"/>
   6   </inputs>
   7   <outputs>
   8     <data format="tabular" name="output" />
   9   </outputs>
  10 
  11   <tests>
  12     <test>
  13       <param name="input" value="primer_tester_content_input.fa"/>
  14       <output name="out_file1" file="primersearch_results.txt"/>
  15     </test>
  16   </tests>
  17 
  18   <help>
  19 This tool tests if primers are present in gorilla female or on human Y or chimp Y chromosome.
  20   </help>
  21 
  22 </tool>