Mercurial > repos > biomonika > primer_tester
view primer_tester.sh @ 1:3a58793617ef draft default tip
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| author | biomonika |
|---|---|
| date | Fri, 25 Jul 2014 17:11:18 -0400 |
| parents | 1e22519d75ac |
| children |
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#!/bin/bash primers_file=$1; results=$2; cat $primers_file | cut -f1 >primers_names; echo "primer Gorilla_female human_Y chimp_Y" >$results; while read primer do echo -n $primer >>$results; for dataset in ${@:3} do search=$(cat $dataset| grep -B 1 "Amplimer 1" | grep "Primer" | grep $primer) if [ "$search" == "" ] then echo -n " NO" >>$results; else echo -n " YES" >>$results; fi done echo >>$results; done < primers_names
