Mercurial > repos > biomonika > monika_mpileup
changeset 23:ac995857db31 draft
Uploaded
author | biomonika |
---|---|
date | Thu, 14 Aug 2014 11:05:02 -0400 |
parents | 6e7041bf4c99 |
children | 48b51529b1b8 |
files | LINKYX_mpileup_wrapper.xml |
diffstat | 1 files changed, 22 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/LINKYX_mpileup_wrapper.xml Thu Aug 14 11:05:02 2014 -0400 @@ -0,0 +1,22 @@ +<tool id="LINKYX_mpileup" name="LINKYX_mpileup"> + <description>Run mpileup with LINKYX-specific parameters</description> + <command interpreter="bash">LINKYX_mpileup_wrapper.sh $output $input $input1</command> + <inputs> + <param format="bam" name="input" type="data" label="Alignment file"/> + <param format="fasta" name="input1" type="data" label="Reference file"/> + </inputs> + <outputs> + <data format="vcf" name="output" /> + </outputs> + + <tests> + <test> + <output name="out_file1" file="alignent_mpileup.txt"/> + </test> + </tests> + + <help> + This tool tests if primers are present in gorilla female or on human Y or chimp Y chromosome. + </help> + + </tool> \ No newline at end of file