Mercurial > repos > biomonika > monika_mpileup

changeset 15:7f57b3213b2b draft

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Deleted selected files
author biomonika
date Wed, 13 Aug 2014 16:51:15 -0400
parents adcb5eed5795
children 0b2d6cee9f2e
files LINKYX_mpileup_wrapper.sh
diffstat 1 files changed, 0 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/LINKYX_mpileup_wrapper.sh	Wed Aug 13 16:38:21 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-#!/bin/bash
-results=$1;
-bam_file=$2;
-reference=$3;
-
-#samtools mpileup -uf $reference $2 >$results;
-samtools mpileup -uf $reference $2 | bcftools view -p 0.85 -cgv - | vcfutils.pl varFilter >$results 2>&1
\ No newline at end of file