Mercurial > repos > biomonika > monika_mpileup

changeset 2:1c324f1ddeac draft

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Uploaded
author biomonika
date Wed, 13 Aug 2014 15:53:27 -0400
parents 2d7df29a7ad2
children 70026ae68af9
files LINKYX_mpileup_wrapper.sh
diffstat 1 files changed, 6 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/LINKYX_mpileup_wrapper.sh	Wed Aug 13 15:53:27 2014 -0400
@@ -0,0 +1,6 @@
+#!/bin/bash
+results=$1;
+bam_file=$2;
+reference=$3;
+
+samtools mpileup -uf $reference $2 >results;
\ No newline at end of file