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view LINKYX_reformat_trinity_header.xml @ 13:ef5c8ed727b0

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toolshed12
author biomonika <biomonika@psu.edu>
date Wed, 10 Sep 2014 10:49:56 -0400
parents e6866610a434
children 2cbcdfd5d489
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<tool id="reformat_trinity_header" name="reformat_trinity_header">
      <description>Reformat Trinity header</description>
      <requirements>
        <requirement type="set_environment">LINKYX_PATH</requirement>
        <requirement type="set_environment">SAMTOOLS</requirement>
        <requirement type="set_environment">PERL_PATH</requirement>
        <requirement type="package" version="0.1.19">samtools</requirement>
      </requirements>
      <command interpreter="bash">LINKYX_reformat_trinity_header.sh $output $input1</command>
      <inputs>
        <param format="fasta" name="input1" type="data" label="Trinity.fasta"/>
      </inputs>
      <outputs>
        <data format="fasta" name="output" />
      </outputs>
  
     <tests>
       <test>
        <output name="out_file1" file="Trinity.fasta"/>
       </test>
     </tests>
   
     <help>
   Reformat Trinity header, keep only part until first space.
     </help>
   
   </tool>