Mercurial > repos > biomonika > linkyx
comparison LINKYX_reformat_trinity_header.xml @ 13:ef5c8ed727b0
toolshed12
| author | biomonika <biomonika@psu.edu> |
|---|---|
| date | Wed, 10 Sep 2014 10:49:56 -0400 |
| parents | e6866610a434 |
| children | 2cbcdfd5d489 |
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| 12:36feb5af775a | 13:ef5c8ed727b0 |
|---|---|
| 1 <tool id="reformat_trinity_header" name="reformat_trinity_header"> | 1 <tool id="reformat_trinity_header" name="reformat_trinity_header"> |
| 2 <description>Reformat Trinity header</description> | 2 <description>Reformat Trinity header</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="set_environment">LINKYX_PATH</requirement> | 4 <requirement type="set_environment">LINKYX_PATH</requirement> |
| 5 <requirement type="set_environment">SAMTOOLS</requirement> | 5 <requirement type="set_environment">SAMTOOLS</requirement> |
| 6 <requirement type="set_environment">PERL_PATH</requirement> | |
| 6 <requirement type="package" version="0.1.19">samtools</requirement> | 7 <requirement type="package" version="0.1.19">samtools</requirement> |
| 7 </requirements> | 8 </requirements> |
| 8 <command interpreter="bash">LINKYX_reformat_trinity_header.sh $output $input1</command> | 9 <command interpreter="bash">LINKYX_reformat_trinity_header.sh $output $input1</command> |
| 9 <inputs> | 10 <inputs> |
| 10 <param format="fasta" name="input1" type="data" label="Trinity.fasta"/> | 11 <param format="fasta" name="input1" type="data" label="Trinity.fasta"/> |