Mercurial > repos > biomonika > linkyx

view LINKYX_reformat_trinity_header.sh @ 23:e3e22ba441c9

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
only bioperl
author biomonika <biomonika@psu.edu>
date Thu, 11 Sep 2014 20:26:05 -0400
parents 695d28139f3e
children
line wrap: on
line source

#!/bin/bash

results=$1 #reformatted fasta sequence written here
trinity_fasta=${2}

perl -pe 's/(>[\S]+).+/$1/' $trinity_fasta >$results
samtools faidx $results