Mercurial > repos > biomonika > linkyx

view LINKYX_reformat_trinity_header.sh @ 9:695d28139f3e

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
toolshed8
author biomonika <biomonika@psu.edu>
date Tue, 09 Sep 2014 14:31:02 -0400
parents
children
line wrap: on
line source

#!/bin/bash

results=$1 #reformatted fasta sequence written here
trinity_fasta=${2}

perl -pe 's/(>[\S]+).+/$1/' $trinity_fasta >$results
samtools faidx $results