Mercurial > repos > biomonika > linkyx

view LINKYX_reformat_trinity_header.sh @ 32:cf7cd22fc5d3 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
add changeset revisions for packages
author biomonika
date Tue, 10 Feb 2015 12:09:34 -0500
parents 695d28139f3e
children
line wrap: on
line source

#!/bin/bash

results=$1 #reformatted fasta sequence written here
trinity_fasta=${2}

perl -pe 's/(>[\S]+).+/$1/' $trinity_fasta >$results
samtools faidx $results