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view LINKYX_reformat_trinity_header.sh @ 31:03782fcd1552

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rename samtools dependency to samtools--fpic
author biomonika
date Tue, 10 Feb 2015 11:46:12 -0500
parents 695d28139f3e
children
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#!/bin/bash

results=$1 #reformatted fasta sequence written here
trinity_fasta=${2}

perl -pe 's/(>[\S]+).+/$1/' $trinity_fasta >$results
samtools faidx $results