comparison LINKYX_reformat_trinity_header.sh @ 22:7997c93ee479

last attempt to install perl as part of linkyx

22:7997c93ee479

#!/bin/bash

results=$1 #reformatted fasta sequence written here
trinity_fasta=${2}

perl -pe 's/(>[\S]+).+/$1/' $trinity_fasta >$results
samtools faidx $results