Mercurial > repos > bgruening > vt_normalize
annotate vt_macros.xml @ 0:7c2ef0170f03 draft default tip
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
| author | bgruening |
|---|---|
| date | Sat, 04 Jun 2016 12:44:06 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
|
0
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
1 <macros> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
2 <xml name="requirements"> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
3 <requirements> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
4 <requirement type="package" version="2015.11.10">vt</requirement> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
5 <yield /> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
6 </requirements> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
7 </xml> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
8 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
9 <xml name="version_command"> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
10 <version_command><![CDATA[ |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
11 vt @BINARY@ --help 2>&1 >/dev/null | head -n 1 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
12 ]]> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
13 </version_command> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
14 </xml> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
15 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
16 <xml name="stdio"> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
17 <stdio> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
18 <exit_code range="1:" /> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
19 <exit_code range=":-1" /> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
20 <regex match="Error:" /> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
21 <regex match="Exception:" /> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
22 </stdio> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
23 </xml> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
24 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
25 <token name="@VERSION@">0.2</token> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
26 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
27 <token name="@CITATION@">------ |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
28 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
29 **Citation** |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
30 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
31 If you use VT in your research, please cite the following project site: |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
32 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
33 https://github.com/atks/vt |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
34 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
35 </token> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
36 <xml name="citations"> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
37 <citations> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
38 <citation type="doi">10.1093/bioinformatics/btv112</citation> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
39 <yield /> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
40 </citations> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
41 </xml> |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
42 </macros> |
