annotate vt_macros.xml @ 0:7c2ef0170f03 draft default tip

planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
author bgruening
date Sat, 04 Jun 2016 12:44:06 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
1 <macros>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
2 <xml name="requirements">
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
3 <requirements>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
4 <requirement type="package" version="2015.11.10">vt</requirement>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
5 <yield />
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
6 </requirements>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
7 </xml>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
8
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
9 <xml name="version_command">
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
10 <version_command><![CDATA[
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
11 vt @BINARY@ --help 2>&1 >/dev/null | head -n 1
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
12 ]]>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
13 </version_command>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
14 </xml>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
15
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
16 <xml name="stdio">
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
17 <stdio>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
18 <exit_code range="1:" />
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
19 <exit_code range=":-1" />
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
20 <regex match="Error:" />
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
21 <regex match="Exception:" />
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
22 </stdio>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
23 </xml>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
24
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
25 <token name="@VERSION@">0.2</token>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
26
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
27 <token name="@CITATION@">------
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
28
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
29 **Citation**
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
30
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
31 If you use VT in your research, please cite the following project site:
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
32
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
33 https://github.com/atks/vt
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
34
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
35 </token>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
36 <xml name="citations">
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
37 <citations>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
38 <citation type="doi">10.1093/bioinformatics/btv112</citation>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
39 <yield />
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
40 </citations>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
41 </xml>
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
42 </macros>