Mercurial > repos > bgruening > upload_testing
changeset 61:797c3e358588
download ncbi binries test
| author | bgruening |
|---|---|
| date | Mon, 26 Aug 2013 17:14:20 -0400 |
| parents | f17bdf6f27bd |
| children | f9c068c8a80a |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 36 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Aug 26 17:14:20 2013 -0400 @@ -0,0 +1,36 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="blast+" version="2.2.26+"> + <install version="1.0"> + <actions> + + <action type="download_binary"> + <url_template architecture="x86_64" os="linux">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-x64-linux.tar.gz</url_template> + <url_template architecture="i386" os="linux">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-ia32-linux.tar.gz</url_template> + <url_template architecture="i686" os="linux">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-ia32-linux.tar.gz</url_template> + <url_template architecture="i686" os="darwin">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-universal-macosx.tar.gz</url_template> + <url_template architecture="i386" os="darwin">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-universal-macosx.tar.gz</url_template> + <url_template architecture="x86_64" os="darwin">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-universal-macosx.tar.gz</url_template> + </action> + + <action type="shell_command"> + tar -zxvf $INSTALL_DIR/ncbi-blast-2.2.26+-x64-linux.tar.gz ; + tar -zxvf $INSTALL_DIR/ncbi-blast-2.2.26+-ia32-linux.tar.gz ; + tar -zxvf $INSTALL_DIR/ncbi-blast-2.2.26+-universal-macosx.tar.gz ; + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> +Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ +binaries from the NCBI, which is faster than performing a local compliation, +avoids any issues with build dependencies, and is more reproducible between +installations as there is no variability from the compiler or library versions. + +For more details, see: +http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download + </readme> + </package> +</tool_dependency>