diff tool_dependencies.xml @ 67:035f1902741a

Uploaded

--- a/tool_dependencies.xml	Mon Oct 21 02:29:17 2013 -0400
+++ b/tool_dependencies.xml	Wed Oct 30 10:04:31 2013 -0400
@@ -1,40 +1,23 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="libtool" version="2.4">
-        <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="Qt" version="4.8">
-        <repository changeset_revision="98d8cfa23907" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="OpenMS" version="1.10.0">
-        <install version="1.0">
-            <actions>
-              <action type="download_by_url">http://downloads.sourceforge.net/project/open-ms/OpenMS/OpenMS-1.10/OpenMS-1.10.0.tar.gz</action>
-
-                <!-- populate the environment variables from the dependend repos -->
-                <action type="set_environment_for_install">
-                    <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                        <package name="libtool" version="2.4" />
-                    </repository>
-                    <repository changeset_revision="98d8cfa23907" name="package_qt_4_8" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                        <package name="Qt" version="4.8 " />
-                    </repository>
-                </action>
-
-              <action type="change_directory">contrib</action>
-              <action type="shell_command">cmake .</action>
-              <action type="change_directory">..</action>
-              <action type="shell_command">cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action>
-              <action type="make_install" />
-              <action type="set_environment">
-                <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
-              </action>
-            </actions>
-        </install>
-        <readme>
-            This package downloads and installs OpenMS.
-            http://open-ms.sourceforge.net/
-        </readme>
-    </package>
-</tool_dependency>
+<?xml version="1.0"?>
+<tool_dependency>
+<!-- see also http://wiki.galaxyproject.org/ToolShedToolFeatures for syntax help -->
+    <package name="xtandem" version="12.10011">
+        <install version="12.10011">
+            <actions>
+                <action type="download_by_url">ftp://ftp.thegpm.org/projects/tandem/source/2011-12-01/tandem-linux-12-10-01-1.zip</action>
+                <!--<action type="shell_command">make clean</action>
+                <action type="shell_command">make</action>-->
+                <action type="move_directory_files">
+					<source_directory>tandem-linux-12-10-01-1</source_directory>
+					<destination_directory>$INSTALL_DIR/tandem-linux-12-10-01-1</destination_directory>
+				</action>
+                <action type="set_environment">
+                    <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+Ensures XTandem is installed.
+        </readme>
+    </package>
+</tool_dependency>
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