Mercurial > repos > bgruening > upload_testing
comparison tool_dependencies.xml @ 67:035f1902741a
Uploaded
| author | bgruening |
|---|---|
| date | Wed, 30 Oct 2013 10:04:31 -0400 |
| parents | 0f06bf18433c |
| children | f6e879c9ce85 |
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| 66:0f06bf18433c | 67:035f1902741a |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="libtool" version="2.4"> | 3 <!-- see also http://wiki.galaxyproject.org/ToolShedToolFeatures for syntax help --> |
| 4 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 4 <package name="xtandem" version="12.10011"> |
| 5 </package> | 5 <install version="12.10011"> |
| 6 <package name="Qt" version="4.8"> | |
| 7 <repository changeset_revision="98d8cfa23907" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="OpenMS" version="1.10.0"> | |
| 10 <install version="1.0"> | |
| 11 <actions> | 6 <actions> |
| 12 <action type="download_by_url">http://downloads.sourceforge.net/project/open-ms/OpenMS/OpenMS-1.10/OpenMS-1.10.0.tar.gz</action> | 7 <action type="download_by_url">ftp://ftp.thegpm.org/projects/tandem/source/2011-12-01/tandem-linux-12-10-01-1.zip</action> |
| 13 | 8 <!--<action type="shell_command">make clean</action> |
| 14 <!-- populate the environment variables from the dependend repos --> | 9 <action type="shell_command">make</action>--> |
| 15 <action type="set_environment_for_install"> | 10 <action type="move_directory_files"> |
| 16 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> | 11 <source_directory>tandem-linux-12-10-01-1</source_directory> |
| 17 <package name="libtool" version="2.4" /> | 12 <destination_directory>$INSTALL_DIR/tandem-linux-12-10-01-1</destination_directory> |
| 18 </repository> | 13 </action> |
| 19 <repository changeset_revision="98d8cfa23907" name="package_qt_4_8" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> | 14 <action type="set_environment"> |
| 20 <package name="Qt" version="4.8 " /> | 15 <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable> |
| 21 </repository> | |
| 22 </action> | 16 </action> |
| 23 | |
| 24 <action type="change_directory">contrib</action> | |
| 25 <action type="shell_command">cmake .</action> | |
| 26 <action type="change_directory">..</action> | |
| 27 <action type="shell_command">cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action> | |
| 28 <action type="make_install" /> | |
| 29 <action type="set_environment"> | |
| 30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 31 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> | |
| 32 </action> | |
| 33 </actions> | 17 </actions> |
| 34 </install> | 18 </install> |
| 35 <readme> | 19 <readme> |
| 36 This package downloads and installs OpenMS. | 20 Ensures XTandem is installed. |
| 37 http://open-ms.sourceforge.net/ | |
| 38 </readme> | 21 </readme> |
| 39 </package> | 22 </package> |
| 40 </tool_dependency> | 23 </tool_dependency> |