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1 <tool id="compomics_reverse" name="Create Target-Decoy Database" version="0.1.0">
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2 <description>Creates a target-decoy database for use with Peptide Shaker</description>
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3 <requirements>
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4 <requirement type="set_environment">PEPTIDESHAKER_SCRIPT_PATH</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 reverse.py
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8 --input='$input'
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9 --output='$output'
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10 --script_path \$PEPTIDESHAKER_SCRIPT_PATH
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11 </command>
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12 <inputs>
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13 <param format="fasta" name="input" type="data" label="FASTA Input" />
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14 </inputs>
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15 <outputs>
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16 <data format="fasta" name="output" />
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17 </outputs>
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18 <help>
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19 **What it does**
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20
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21 Given an input database, this tool will produce a target-decoy
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22 database in the format required by PeptideShaker using dbtoolkit.
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23
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24 ------
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25
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26 **Citation**
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27
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28 For the underlying tool, please cite `Martens et al. DBToolkit: processing protein databases for peptide-centric proteomics. Bioinformatics (2005) vol. 21 (17) pp. 3584-5`.
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29
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30 If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/peptideshaker .
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31
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32 </help>
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33 </tool>
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