|
71
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="libgd" version="2.1.0">
|
|
|
4 <repository changeset_revision="1efb934d4600" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6 <package name="trans_proteomic_pipeline" version="4.6.3">
|
|
|
7 <install version="1.0">
|
|
|
8 <actions>
|
|
|
9 <action type="download_by_url">https://downloads.sourceforge.net/project/sashimi/Trans-Proteomic%20Pipeline%20%28TPP%29/TPP%20v4.6%20%28occupy%29%20rev%203/TPP-4.6.3.tgz</action>
|
|
|
10 <!-- populate the environment variables from the dependend repos -->
|
|
|
11 <action type="set_environment_for_install">
|
|
|
12 <repository changeset_revision="1efb934d4600" name="package_libgd_2_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
|
|
|
13 <package name="libgd" version="2.1.0" />
|
|
|
14 </repository>
|
|
|
15 </action>
|
|
|
16 <action type="change_directory">./trans_proteomic_pipeline/src/</action>
|
|
|
17 <action type="shell_command">echo 'TPP_ROOT=$INSTALL_DIR' > Makefile.config.incl</action>
|
|
|
18 <action type="make_install" />
|
|
|
19 <action type="set_environment">
|
|
|
20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
|
|
|
21 <environment_variable action="set_to" name="TPP_ROOT_PATH">$INSTALL_DIR</environment_variable>
|
|
|
22 </action>
|
|
|
23 </actions>
|
|
|
24 </install>
|
|
|
25 <readme>
|
|
|
26 Installs and complils the trans proteomic pipeline in version 4.6.3.
|
|
|
27 The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics, developed at the SPC.
|
|
|
28
|
|
|
29 http://tools.proteomecenter.org/
|
|
|
30
|
|
|
31 PATH will be set.
|
|
|
32 TPP_ROOT_PATH will point to the root path of the installation.
|
|
|
33 </readme>
|
|
|
34 </package>
|
|
|
35 </tool_dependency>
|
