|
35
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
36
|
3 <package name="R_3_0_1" version="3.0.1">
|
|
38
|
4 <repository changeset_revision="564b46e4fda7" name="precommit_test" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
|
|
36
|
5 </package>
|
|
|
6
|
|
|
7
|
|
|
8 <package name="deseq2" version="1.0.17">
|
|
35
|
9 <install version="1.0">
|
|
|
10 <actions>
|
|
36
|
11 <action type="download_file">http://bioconductor.org/packages/release/bioc/src/contrib/DESeq2_1.0.17.tar.gz</action>
|
|
|
12
|
|
|
13 <action type="set_environment_for_install">
|
|
38
|
14 <repository changeset_revision="564b46e4fda7" name="precommit_test" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
|
|
36
|
15 <package name="R_3_0_1" version="3.0.1" />
|
|
|
16 </repository>
|
|
|
17 </action>
|
|
|
18
|
|
|
19 <action type="make_directory">$INSTALL_DIR/deseq2/</action>
|
|
|
20 <action type="shell_command">
|
|
|
21 Rscript -e "source('http://bioconductor.org/biocLite.R'); install.packages('DESeq2', lib='$INSTALL_DIR/deseq2/', repos='http://cran.us.r-project.org')"
|
|
|
22 </action>
|
|
35
|
23 <action type="set_environment">
|
|
36
|
24 <environment_variable action="append_to" name="R_LIBS">$INSTALL_DIR/deseq2/</environment_variable>
|
|
35
|
25 </action>
|
|
|
26 </actions>
|
|
|
27 </install>
|
|
36
|
28 <readme>DESeq2</readme>
|
|
35
|
29 </package>
|
|
|
30 </tool_dependency>
|
