Mercurial > repos > bgruening > text_processing

annotate recurring_lines.xml @ 27:08cdbfffce67 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 2dc2df988bd2dde9f8d7f629b594186dbd4fdc2b
author bgruening
date Fri, 07 Mar 2025 20:43:41 +0000
parents f22a309187a3
children e8b38ade9b3e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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f22a309187a3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7
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1 <tool id="tp_text_file_with_recurring_lines" name="Create text file" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
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2 <description>with recurring lines</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="creator"/>
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7 <expand macro="requirements" />
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8 <version_command>yes --version | head -n 1</version_command>
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9 <command>
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10 <![CDATA[
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11 #for $token in $token_set:
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12 #if str($token.repeat_select.repeat_select_opts) == 'user':
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13 times=#echo $token.repeat_select.times#;
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14 #else:
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15 times=`wc -l $token.repeat_select.infile | awk '{print $1}'`;
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16 #end if
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17 yes -- '${token.line}' 2>/dev/null | head -n \$times >> '$outfile';
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18 #end for
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19 ]]>
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20 </command>
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21 <inputs>
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22 <repeat name="token_set" title=" selection" min="1">
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23 <param name="line" type="text"
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24 label="Characters to insert" help="Specify the characters that will be inserted X times in every line"/>
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25 <conditional name="repeat_select">
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26 <param name="repeat_select_opts" type="select" label="Specify the number of iterations by">
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27 <option value="file">File (for each line in file)</option>
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28 <option value="user" selected="True">User defined number</option>
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29 </param>
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30 <when value="user">
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31 <param name="times" type="integer" value="10" min="1" label="How many times?"/>
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32 </when>
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33 <when value="file">
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34 <param name="infile" type="data" format="txt" label="Template file"
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35 help="For every line, the specified characters will be written once. That means X is the line-number from the given file."/>
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36 </when>
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37 </conditional>
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38 </repeat>
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39 </inputs>
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40 <outputs>
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41 <data format="txt" name="outfile"/>
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42 </outputs>
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43 <tests>
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44 <test>
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45 <repeat name="token_set">
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46 <param name="line" value="freedom" />
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47 <conditional name="repeat_select">
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48 <param name="repeat_select_opts" value="file" />
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49 <param name="infile" value="multijoin2.txt" />
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50 </conditional>
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51 </repeat>
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52 <output name="outfile" file="recurring_result1.txt" />
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53 </test>
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54 <test>
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55 <repeat name="token_set">
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56 <param name="line" value="freedom" />
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57 <conditional name="repeat_select">
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58 <param name="repeat_select_opts" value="user" />
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59 <param name="times" value="10" />
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60 </conditional>
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61 </repeat>
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62 <repeat name="token_set">
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63 <param name="line" value="war is over" />
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64 <conditional name="repeat_select">
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65 <param name="repeat_select_opts" value="user" />
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66 <param name="times" value="10" />
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67 </conditional>
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68 </repeat>
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69 <output name="outfile" file="recurring_result2.txt" />
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70 </test>
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71 </tests>
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72 <help>
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73 <![CDATA[
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74 .. class:: infomark
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75
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76 **What it does**
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77
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78 This tool creates a text file with recurring lines. You can specify a bunch of characters or entire sentences.
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79 The entire string will be printed X times separated by a line break. X can be either given by the use as a number or calculated by a given file.
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80 In case the user provides a file, the line number will be used as X.
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81
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82 ]]>
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83 </help>
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84 <expand macro="citations" />
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85 </tool>