Mercurial > repos > bgruening > test_repository_setup_r_environment

changeset 0:879698bd4bdc draft

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Uploaded
author bgruening
date Thu, 31 Oct 2013 06:43:53 -0400
parents
children b16afe2531c8
files tool_dependencies.xml
diffstat 1 files changed, 29 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Oct 31 06:43:53 2013 -0400
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R_3_0_1" version="3.0.1">
+        <repository changeset_revision="e16e08f41ed7" name="package_r_3_0_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+
+    <package name="rjson" version="0.2.13">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+
+                    <repository changeset_revision="e16e08f41ed7" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="R_3_0_1" version="3.0.1" />
+                    </repository>
+                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_0_18/rjson_0.2.13.tar.gz</package>
+
+                </action>
+
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="TEST_ENV_VAR">$INSTALL_DIR</environment_variable>
+                </action>
+
+            </actions>
+        </install>
+        <readme>
+            Test repository for easy installation of R packages.
+        </readme>
+    </package>
+</tool_dependency>