Mercurial > repos > bgruening > sklearn_searchcv

annotate search_model_validation.xml @ 8:51cabe6d4ca6 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
author bgruening
date Tue, 14 May 2019 17:37:36 -0400
parents bd2ef98a56be
children 422f6e8a492d
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1 <tool id="sklearn_searchcv" name="Hyperparameter Search" version="@VERSION@">
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2 <description>using exhausitive or randomized search</description>
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3 <macros>
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4 <import>main_macros.xml</import>
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5 </macros>
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6 <expand macro="python_requirements"/>
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7 <expand macro="macro_stdio"/>
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8 <version_command>echo "@VERSION@"</version_command>
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9 <command>
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10 <![CDATA[
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11 python '$__tool_directory__/search_model_validation.py'
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12 --inputs '$inputs'
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13 --estimator '$search_schemes.infile_estimator'
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14 --infile1 '$input_options.infile1'
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15 --infile2 '$input_options.infile2'
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16 --outfile_result '$outfile_result'
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17 #if $save
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18 --outfile_object '$outfile_object'
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19 #end if
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20 #if $search_schemes.options.cv_selector.selected_cv in ['GroupKFold', 'GroupShuffleSplit', 'LeaveOneGroupOut', 'LeavePGroupsOut']
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21 --groups '$inputs,$search_schemes.options.cv_selector.groups_selector.infile_g'
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22 #end if
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23
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24 ]]>
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25 </command>
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26 <configfiles>
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27 <inputs name="inputs" />
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28 </configfiles>
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29 <inputs>
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30 <conditional name="search_schemes">
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31 <param name="selected_search_scheme" type="select" label="Select a model selection search scheme">
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32 <option value="GridSearchCV" selected="true">GridSearchCV - Exhaustive search over specified parameter values for an estimator </option>
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33 <option value="RandomizedSearchCV">RandomizedSearchCV - Randomized search on hyper parameters for an estimator</option>
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34 </param>
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35 <when value="GridSearchCV">
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36 <expand macro="search_cv_estimator"/>
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37 <section name="options" title="Advanced Options for SearchCV" expanded="false">
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38 <expand macro="search_cv_options"/>
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39 </section>
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40 </when>
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41 <when value="RandomizedSearchCV">
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42 <expand macro="search_cv_estimator"/>
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43 <section name="options" title="Advanced Options for SearchCV" expanded="false">
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44 <expand macro="search_cv_options"/>
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45 <param argument="n_iter" type="integer" value="10" label="Number of parameter settings that are sampled"/>
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46 <expand macro="random_state"/>
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47 </section>
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48 </when>
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49 </conditional>
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50 <param name="save" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Save the searchCV object"/>
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51 <expand macro="sl_mixed_input"/>
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52 <conditional name="train_test_split">
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53 <param name="do_split" type="select" label="Whether to hold a portion of samples for test exclusively?" help="train_test_split">
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54 <option value="no">Nope</option>
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55 <option value="yes">Yes - I do</option>
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56 </param>
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57 <when value='no'/>
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58 <when value='yes'>
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59 <param argument="test_size" type="float" optional="True" value="0.25" label="Test size:"/>
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60 <param argument="train_size" type="float" optional="True" value="" label="Train size:"/>
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61 <param argument="random_state" type="integer" optional="True" value="" label="Random seed number:"/>
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62 <param argument="shuffle" type="select">
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63 <option value="None">None - No shuffle</option>
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64 <option value="simple">Shuffle -- for regression problems</option>
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65 <option value="stratified">StratifiedShuffle -- will use the target values as class labels</option>
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66 <option value="group">GroupShuffle -- make sure group CV option is choosen</option>
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67 </param>
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68 </when>
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69 </conditional>
0
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70 </inputs>
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71 <outputs>
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72 <data format="tabular" name="outfile_result"/>
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73 <data format="zip" name="outfile_object" label="${search_schemes.selected_search_scheme} on ${on_string}">
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74 <filter>save</filter>
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75 </data>
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76 </outputs>
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77 <tests>
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78 <test>
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79 <param name="selected_search_scheme" value="GridSearchCV"/>
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80 <param name="infile_estimator" value="pipeline01" ftype="zip"/>
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81 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/>
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82 <repeat name="param_set">
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83 <param name="sp_list" value="[1, 10, 100, 1000]"/>
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84 <param name="sp_name" value="svr__C"/>
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85 </repeat>
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86 <repeat name="param_set">
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87 <param name="sp_list" value="[-1, 3, 5, 7, 9]"/>
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88 <param name="sp_name" value="selectkbest__k"/>
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89 </repeat>
3
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90 <param name="error_score" value="false"/>
0
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91 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
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92 <param name="header1" value="true" />
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93 <param name="selected_column_selector_option" value="all_columns"/>
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94 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
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95 <param name="header2" value="true" />
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96 <param name="selected_column_selector_option2" value="all_columns"/>
5
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97 <output name="outfile_result">
0
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98 <assert_contents>
5
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99 <has_n_columns n="13"/>
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100 <has_text text="0.7938837807353147"/>
8
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101 <has_text text="{'selectkbest__k': 9, 'svr__C': 1}"/>
0
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102 </assert_contents>
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103 </output>
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104 </test>
5
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105 <test expect_failure="true">
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106 <param name="selected_search_scheme" value="GridSearchCV"/>
8
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107 <param name="infile_estimator" value="pipeline01" ftype="zip"/>
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108 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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109 <repeat name="param_set">
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110 <param name="sp_list" value="[1, 10, 100, 1000]"/>
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111 <param name="sp_name" value="svr__C"/>
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112 </repeat>
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113 <repeat name="param_set">
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114 <param name="sp_list" value="[-1, 3, 5, 7, 9]"/>
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115 <param name="sp_name" value="selectkbest__k"/>
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116 </repeat>
5
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117 <param name="error_score" value="true"/>
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118 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
9cbb9e9cd074 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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119 <param name="header1" value="true" />
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120 <param name="selected_column_selector_option" value="all_columns"/>
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121 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
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122 <param name="header2" value="true" />
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123 <param name="selected_column_selector_option2" value="all_columns"/>
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124 </test>
0
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125 <test>
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126 <param name="selected_search_scheme" value="RandomizedSearchCV"/>
8
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127 <param name="infile_estimator" value="pipeline01" ftype="zip"/>
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128 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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129 <repeat name="param_set">
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130 <param name="sp_list" value="[1, 10, 100, 1000]"/>
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131 <param name="sp_name" value="svr__C"/>
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132 </repeat>
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133 <repeat name="param_set">
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134 <param name="sp_list" value="['linear', 'poly', 'rbf', 'sigmoid']"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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135 <param name="sp_name" value="svr__kernel"/>
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136 </repeat>
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137 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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138 <param name="sp_list" value="[3, 5, 7, 9]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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139 <param name="sp_name" value="selectkbest__k"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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140 </repeat>
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141 <repeat name="param_set">
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142 <param name="sp_list" value="[True, False]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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143 <param name="sp_name" value="robustscaler__with_centering"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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144 </repeat>
0
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145 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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146 <param name="header1" value="true" />
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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147 <param name="selected_column_selector_option" value="all_columns"/>
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148 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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149 <param name="header2" value="true" />
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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150 <param name="selected_column_selector_option2" value="all_columns"/>
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151 <output name="outfile_result" >
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152 <assert_contents>
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153 <has_n_columns n="15" />
8
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154 <has_text text="param_robustscaler__with_centering"/>
0
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155 </assert_contents>
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156 </output>
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157 </test>
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158 <test>
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159 <param name="selected_search_scheme" value="RandomizedSearchCV"/>
8
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160 <param name="infile_estimator" value="pipeline03" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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161 <param name="infile_params" value="get_params03.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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162 <repeat name="param_set">
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163 <param name="sp_list" value="np_arange(50, 1001, 50)"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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164 <param name="sp_name" value="xgbclassifier__n_estimators"/>
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165 </repeat>
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166 <repeat name="param_set">
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167 <param name="sp_list" value="scipy_stats_randint(1, 51)"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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168 <param name="sp_name" value="xgbclassifier__max_depth"/>
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169 </repeat>
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170 <repeat name="param_set">
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171 <param name="sp_list" value="scipy_stats_uniform(0., 1.)"/>
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172 <param name="sp_name" value="xgbclassifier__gamma"/>
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173 </repeat>
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174 <repeat name="param_set">
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175 <param name="sp_list" value="[324089]"/>
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176 <param name="sp_name" value="xgbclassifier__random_state"/>
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177 </repeat>
0
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178 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
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179 <param name="header1" value="true" />
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180 <param name="selected_column_selector_option" value="all_columns"/>
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181 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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182 <param name="header2" value="true" />
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183 <param name="selected_column_selector_option2" value="all_columns"/>
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184 <output name="outfile_result" >
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185 <assert_contents>
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186 <has_n_columns n="15" />
8
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187 <has_text text="param_xgbclassifier__max_depth"/>
0
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188 </assert_contents>
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189 </output>
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190 </test>
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191 <test>
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192 <param name="selected_search_scheme" value="GridSearchCV"/>
8
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193 <param name="infile_estimator" value="pipeline04" ftype="zip"/>
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194 <param name="infile_params" value="get_params04.tabular" ftype="tabular"/>
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195 <repeat name="param_set">
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196 <param name="sp_list" value="list(range(100, 1001, 100))"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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197 <param name="sp_name" value="linearsvc__random_state"/>
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198 </repeat>
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199 <repeat name="param_set">
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200 <param name="sp_list" value=": [sklearn_ensemble.ExtraTreesClassifier(n_estimators=100, random_state=324089)]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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201 <param name="sp_name" value="selectfrommodel__estimator"/>
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202 </repeat>
0
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203 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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204 <param name="header1" value="true" />
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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205 <param name="selected_column_selector_option" value="all_columns"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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206 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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207 <param name="header2" value="true" />
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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208 <param name="selected_column_selector_option2" value="all_columns"/>
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209 <output name="outfile_result">
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210 <assert_contents>
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211 <has_n_columns n="13"/>
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212 <has_text text="0.05363984674329502"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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213 </assert_contents>
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214 </output>
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215 </test>
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216 <test>
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217 <param name="selected_search_scheme" value="GridSearchCV"/>
8
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218 <param name="infile_estimator" value="pipeline01" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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219 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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220 <repeat name="param_set">
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221 <param name="sp_list" value="[1, 10, 100, 1000]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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222 <param name="sp_name" value="svr__C"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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223 </repeat>
0
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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224 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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225 <param name="header1" value="true" />
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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226 <param name="selected_column_selector_option" value="all_columns"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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227 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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228 <param name="header2" value="true" />
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229 <param name="selected_column_selector_option2" value="all_columns"/>
8
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230 <output name="outfile_object" file="searchCV01" compare="sim_size" delta="10"/>
0
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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231 </test>
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232 <test>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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233 <param name="selected_search_scheme" value="GridSearchCV"/>
8
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234 <param name="infile_estimator" value="pipeline06" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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235 <param name="infile_params" value="get_params06.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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236 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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237 <param name="sp_list" value="[10, 50, 200, 1000]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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238 <param name="sp_name" value="adaboostregressor__n_estimators"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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239 </repeat>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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240 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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241 <param name="sp_list" value="[324089]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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242 <param name="sp_name" value="adaboostregressor__random_state"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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243 </repeat>
0
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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244 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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245 <param name="header1" value="true" />
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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246 <param name="selected_column_selector_option" value="all_columns"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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247 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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248 <param name="header2" value="true" />
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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249 <param name="selected_column_selector_option2" value="all_columns"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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250 <output name="outfile_result">
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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251 <assert_contents>
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252 <has_n_columns n="13"/>
7
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253 <has_text_matching expression=".+0.7772355090078996" />
0
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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254 </assert_contents>
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255 </output>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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256 </test>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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257 <test>
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258 <param name="selected_search_scheme" value="GridSearchCV"/>
8
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259 <param name="infile_estimator" value="pipeline07" ftype="zip"/>
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260 <param name="infile_params" value="get_params07.tabular" ftype="tabular"/>
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261 <repeat name="param_set">
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262 <param name="sp_list" value="[10, 50, 100, 200]"/>
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263 <param name="sp_name" value="adaboostclassifier__n_estimators"/>
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264 </repeat>
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265 <repeat name="param_set">
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266 <param name="sp_list" value="[324089]"/>
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267 <param name="sp_name" value="adaboostclassifier__random_state"/>
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268 </repeat>
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269 <repeat name="param_set">
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270 <param name="sp_list" value="[1.0, 2.0]"/>
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271 <param name="sp_name" value="rbfsampler__gamma"/>
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272 </repeat>
7
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273 <param name='selected_cv' value="default"/>
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274 <param name="n_splits" value="3"/>
0
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275 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
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276 <param name="header1" value="true" />
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277 <param name="selected_column_selector_option" value="all_columns"/>
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278 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
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279 <param name="header2" value="true" />
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280 <param name="selected_column_selector_option2" value="all_columns"/>
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281 <output name="outfile_result">
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282 <assert_contents>
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283 <has_n_columns n="14"/>
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284 <has_text_matching expression=".+0.05747126436781609[^/d]" />
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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285 </assert_contents>
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286 </output>
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287 </test>
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288 <test>
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289 <param name="selected_search_scheme" value="GridSearchCV"/>
8
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290 <param name="infile_estimator" value="pipeline08" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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291 <param name="infile_params" value="get_params08.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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292 <repeat name="param_set">
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293 <param name="sp_list" value="[10, 50, 100, 200]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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294 <param name="sp_name" value="adaboostclassifier__n_estimators"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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295 </repeat>
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296 <repeat name="param_set">
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297 <param name="sp_list" value="[324089]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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298 <param name="sp_name" value="adaboostclassifier__random_state"/>
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299 </repeat>
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300 <repeat name="param_set">
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301 <param name="sp_list" value="['ward', 'complete', 'average']"/>
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302 <param name="sp_name" value="featureagglomeration__linkage"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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303 </repeat>
0
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304 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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305 <param name="header1" value="true" />
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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306 <param name="selected_column_selector_option" value="all_columns"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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307 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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308 <param name="header2" value="true" />
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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309 <param name="selected_column_selector_option2" value="all_columns"/>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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310 <output name="outfile_result">
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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311 <assert_contents>
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312 <has_text_matching expression=".+0.08045977011494253[^/w]+10[^/w]" />
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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313 </assert_contents>
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314 </output>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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315 </test>
2
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316 <test>
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317 <param name="selected_search_scheme" value="GridSearchCV"/>
8
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318 <param name="infile_estimator" value="pipeline01" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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319 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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320 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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321 <param name="sp_list" value="[1, 10, 100, 1000]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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322 <param name="sp_name" value="svr__C"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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323 </repeat>
7
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324 <param name='selected_cv' value="StratifiedKFold"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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325 <param name="n_splits" value="3"/>
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326 <param name="shuffle" value="true" />
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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327 <param name="random_state" value="10"/>
2
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328 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
79f41472b53f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
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329 <param name="header1" value="true" />
79f41472b53f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
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330 <param name="selected_column_selector_option" value="all_columns"/>
79f41472b53f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
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331 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
79f41472b53f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
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332 <param name="header2" value="true" />
79f41472b53f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
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333 <param name="selected_column_selector_option2" value="all_columns"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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334 <output name="outfile_object" file="searchCV02" compare="sim_size" delta="10"/>
2
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335 </test>
3
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336 <test>
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337 <param name="selected_search_scheme" value="GridSearchCV"/>
8
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338 <param name="infile_estimator" value="pipeline03" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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339 <param name="infile_params" value="get_params03.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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340 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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341 <param name="sp_list" value="[10, 50, 200, 1000]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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342 <param name="sp_name" value="xgbclassifier__n_estimators"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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343 </repeat>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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344 <repeat name="param_set">
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345 <param name="sp_list" value="[324089]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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346 <param name="sp_name" value="xgbclassifier__random_state"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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347 </repeat>
3
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348 <param name="primary_scoring" value="balanced_accuracy"/>
7
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349 <param name='selected_cv' value="StratifiedKFold"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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350 <param name="n_splits" value="3"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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351 <param name="shuffle" value="true" />
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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352 <param name="random_state" value="10"/>
3
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353 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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354 <param name="header1" value="true" />
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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355 <param name="selected_column_selector_option" value="all_columns"/>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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356 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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357 <param name="header2" value="true" />
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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358 <param name="selected_column_selector_option2" value="all_columns"/>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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359 <output name="outfile_result" >
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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360 <assert_contents>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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361 <has_n_columns n="13" />
5
9cbb9e9cd074 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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parents: 4
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362 <has_text text="0.09003449195911103"/>
3
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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363 </assert_contents>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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364 </output>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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365 </test>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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366 <test>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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367 <param name="selected_search_scheme" value="GridSearchCV"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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368 <param name="infile_estimator" value="pipeline09" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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369 <param name="infile_params" value="get_params09.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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370 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
371 <param name="sp_list" value="[50, 100, 150, 200]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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372 <param name="sp_name" value="relieff__n_neighbors"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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373 </repeat>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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374 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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375 <param name="sp_list" value="[324089]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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376 <param name="sp_name" value="randomforestregressor__random_state"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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377 </repeat>
3
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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diff changeset
378 <param name="primary_scoring" value="explained_variance"/>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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379 <param name="secondary_scoring" value="neg_mean_squared_error,r2"/>
7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
380 <param name='selected_cv' value="StratifiedKFold"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
381 <param name="n_splits" value="3"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
382 <param name="shuffle" value="true" />
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
383 <param name="random_state" value="10"/>
3
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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diff changeset
384 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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385 <param name="header1" value="true" />
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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386 <param name="selected_column_selector_option" value="all_columns"/>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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diff changeset
387 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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diff changeset
388 <param name="header2" value="true" />
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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diff changeset
389 <param name="selected_column_selector_option2" value="all_columns"/>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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390 <output name="outfile_result" >
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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391 <assert_contents>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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392 <has_n_columns n="25" />
7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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parents: 6
diff changeset
393 <has_text text="0.7879267424165166"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
394 <has_text text="0.787865425577799"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
395 <has_text text="-29.40436189868029"/>
3
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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396 </assert_contents>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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397 </output>
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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398 </test>
6
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
399 <test>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
400 <param name="selected_search_scheme" value="GridSearchCV"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
401 <param name="infile_estimator" value="pipeline02" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
402 <param name="infile_params" value="get_params02.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
403 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
404 <param name="sp_list" value="[0.01, 0.001]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
405 <param name="sp_name" value="lassocv__eps"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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406 </repeat>
6
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
407 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
408 <param name="header1" value="true" />
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
409 <param name="selected_column_selector_option" value="all_columns"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
410 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
411 <param name="header2" value="true" />
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
412 <param name="selected_column_selector_option2" value="all_columns"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
413 <output name="outfile_result">
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
414 <assert_contents>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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415 <has_n_columns n="12"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
416 <has_text text="0.776296816136668" />
6
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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417 </assert_contents>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
418 </output>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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419 </test>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
420 <test>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
421 <param name="selected_search_scheme" value="GridSearchCV"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
422 <param name="infile_estimator" value="pipeline05" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
423 <param name="infile_params" value="get_params05.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
424 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
425 <param name="sp_list" value="[10, 50, 100, 300]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
426 <param name="sp_name" value="randomforestregressor__n_estimators"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
427 </repeat>
6
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
428 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
429 <param name="header1" value="true" />
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
430 <param name="selected_column_selector_option" value="all_columns"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
431 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
432 <param name="header2" value="true" />
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
433 <param name="selected_column_selector_option2" value="all_columns"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
434 <output name="outfile_result">
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
435 <assert_contents>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
436 <has_n_columns n="12"/>
7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
437 <has_text text="0.8176576686816003" />
6
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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438 </assert_contents>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
439 </output>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
440 </test>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
441 <test expect_failure="true">
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
442 <param name="selected_search_scheme" value="GridSearchCV"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
443 <param name="infile_estimator" value="pipeline01" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
444 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
445 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
446 <param name="sp_list" value="open('~/.ssh/authorized_keys', 'r').read()"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
447 <param name="sp_name" value="svr__C"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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448 </repeat>
6
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
449 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
450 <param name="header1" value="true" />
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
451 <param name="selected_column_selector_option" value="all_columns"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
452 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
453 <param name="header2" value="true" />
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
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diff changeset
454 <param name="selected_column_selector_option2" value="all_columns"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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455 </test>
7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
456 <test>
6
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
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diff changeset
457 <param name="selected_search_scheme" value="GridSearchCV"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
458 <param name="infile_estimator" value="pipeline10" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
459 <param name="infile_params" value="get_params10.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
460 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
461 <param name="sp_list" value=": [sklearn_tree.DecisionTreeRegressor(random_state=0), sklearn_tree.ExtraTreeRegressor(random_state=0)]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
462 <param name="sp_name" value="adaboostregressor__base_estimator"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
463 </repeat>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
464 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
465 <param name="sp_list" value="[10]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
466 <param name="sp_name" value="adaboostregressor__random_state"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
467 </repeat>
7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
468 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
469 <param name="header1" value="true" />
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
470 <param name="selected_column_selector_option" value="all_columns"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
471 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
472 <param name="header2" value="true" />
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
473 <param name="selected_column_selector_option2" value="all_columns"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
474 <output name="outfile_result">
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
475 <assert_contents>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
476 <has_n_columns n="13"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
477 <has_text text="0.8165699136618538"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
478 </assert_contents>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
479 </output>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
480 </test>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
481 <test>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
482 <param name="selected_search_scheme" value="GridSearchCV"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
483 <param name="infile_estimator" value="pipeline09" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
484 <param name="infile_params" value="get_params09.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
485 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
486 <param name="sp_list" value=": [sklearn_feature_selection.SelectKBest(),
7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
487 sklearn_feature_selection.VarianceThreshold(), skrebate_ReliefF(), sklearn_preprocessing.RobustScaler()]"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
488 <param name="sp_name" value="relieff"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
489 </repeat>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
490 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
491 <param name="sp_list" value="[10]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
492 <param name="sp_name" value="randomforestregressor__random_state"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
493 </repeat>
7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
494 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
495 <param name="header1" value="true" />
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
496 <param name="selected_column_selector_option" value="all_columns"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
497 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
498 <param name="header2" value="true" />
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
499 <param name="selected_column_selector_option2" value="all_columns"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
500 <output name="outfile_result">
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
501 <assert_contents>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
502 <has_n_columns n="13"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
503 <has_text text="0.8151250518677202"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
504 </assert_contents>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
505 </output>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
506 </test>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
507 <test>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff changeset
508 <param name="selected_search_scheme" value="GridSearchCV"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
509 <param name="infile_estimator" value="pipeline09" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
510 <param name="infile_params" value="get_params09.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
511 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
512 <param name="sp_list" value=": [None,'sk_prep_all', 8, 14, skrebate_ReliefF(n_features_to_select=12)]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
513 <param name="sp_name" value="relieff"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
514 </repeat>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
515 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
516 <param name="sp_list" value="[10]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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diff changeset
517 <param name="sp_name" value="randomforestregressor__random_state"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
518 </repeat>
6
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents: 5
diff changeset
519 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents: 5
diff changeset
520 <param name="header1" value="true" />
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents: 5
diff changeset
521 <param name="selected_column_selector_option" value="all_columns"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents: 5
diff changeset
522 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents: 5
diff changeset
523 <param name="header2" value="true" />
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents: 5
diff changeset
524 <param name="selected_column_selector_option2" value="all_columns"/>
7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
525 <output name="outfile_result">
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
526 <assert_contents>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
527 <has_n_columns n="13"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
528 <has_text text="0.8151250518677202"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
529 </assert_contents>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
530 </output>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
531 </test>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
532 <test>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
533 <param name="selected_search_scheme" value="GridSearchCV"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
534 <param name="infile_estimator" value="pipeline11" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
535 <param name="infile_params" value="get_params11.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
536 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
537 <param name="sp_list" value="[3,4,5]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
538 <param name="sp_name" value="editednearestneighbours__n_neighbors"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
539 </repeat>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
540 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
541 <param name="sp_list" value="[10]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
542 <param name="sp_name" value="editednearestneighbours__random_state"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
543 </repeat>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
544 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
545 <param name="sp_list" value="[10, 50, 100, 500]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
546 <param name="sp_name" value="randomforestclassifier__n_estimators"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
547 </repeat>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
548 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
549 <param name="sp_list" value="[10]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
550 <param name="sp_name" value="randomforestclassifier__random_state"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
551 </repeat>
7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
552 <param name="primary_scoring" value="f1_macro"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
553 <param name="secondary_scoring" value="balanced_accuracy,accuracy"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
554 <param name="n_splits" value="5"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
555 <param name="infile1" value="imblearn_X.tabular" ftype="tabular"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
556 <param name="header1" value="true" />
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
557 <param name="selected_column_selector_option" value="all_columns"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
558 <param name="infile2" value="imblearn_y.tabular" ftype="tabular"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
559 <param name="header2" value="true" />
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
560 <param name="selected_column_selector_option2" value="all_columns"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
561 <output name="outfile_result">
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
562 <assert_contents>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
563 <has_n_columns n="33"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
564 <has_text text="0.9945648481554453"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
565 <has_text text="0.9988888888888889"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
566 <has_text text="0.998"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
567 </assert_contents>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
568 </output>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
569 </test>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
570 <test>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
571 <param name="selected_search_scheme" value="GridSearchCV"/>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
572 <param name="infile_estimator" value="pipeline12" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
573 <param name="infile_params" value="get_params12.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
574 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
575 <param name="sp_list" value="[10, 100, 200]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
576 <param name="sp_name" value="rfe__estimator__n_estimators"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
577 </repeat>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
578 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
579 <param name="sp_list" value="[10, None]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
580 <param name="sp_name" value="rfe__n_features_to_select"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
581 </repeat>
7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
582 <param name="primary_scoring" value="r2"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
583 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
584 <param name="header1" value="true" />
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
585 <param name="selected_column_selector_option" value="all_columns"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
586 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
587 <param name="header2" value="true" />
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
588 <param name="selected_column_selector_option2" value="all_columns"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
589 <output name="outfile_result">
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
590 <assert_contents>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
591 <has_n_columns n="13"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
592 <has_text text="0.8149439619875293"/>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
593 </assert_contents>
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents: 6
diff changeset
594 </output>
6
d4083bfe27d2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents: 5
diff changeset
595 </test>
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
596 <!--test>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
597 <conditional name="search_schemes">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
598 <param name="selected_search_scheme" value="GridSearchCV"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
599 <param name="infile_estimator" value="pipeline05" ftype="zip"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
600 <section name="search_params_builder">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
601 <param name="infile_params" value="get_params05.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
602 <repeat name="param_set">
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
603 <param name="sp_list" value="[10, 50, 100, 300]"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
604 <param name="sp_name" value="randomforestregressor__n_estimators"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents: 7
diff changeset
605 </repeat>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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606 </section>
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607 </conditional>
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608 <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
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609 <param name="header1" value="true" />
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610 <param name="selected_column_selector_option" value="all_columns"/>
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611 <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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612 <param name="header2" value="true" />
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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613 <param name="selected_column_selector_option2" value="all_columns"/>
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614 <output name="outfile_result">
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615 <assert_contents>
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616 <has_n_columns n="1"/>
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617 <has_text text="0.7986842219788204" />
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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618 </assert_contents>
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619 </output>
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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620 </test-->
0
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621 </tests>
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622 <help>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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623 <![CDATA[
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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624 **What it does**
8
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625 Searches optimized parameter settings for an estimator or pipeline through either exhaustive grid cross validation search or Randomized cross validation search.
0
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626 please refer to `Scikit-learn model_selection GridSearchCV`_, `Scikit-learn model_selection RandomizedSearchCV`_ and `Tuning hyper-parameters`_.
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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627
8
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628 **Return**
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629
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630 Outputs `cv_results_` from SearchCV in a tabular dataset if no train_test_split, otherwise the test score(s). Besides, Output of the SearchCV object is optional.
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631
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632 **How to choose search patameters grid?**
0
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633
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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634 Please refer to `svm`_, `linear_model`_, `ensemble`_, `naive_bayes`_, `tree`_, `neighbors`_ and `xgboost`_ for estimator parameters.
8
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635 Refer to `sklearn.preprocessing`_, `feature_selection`_, `decomposition`_, `kernel_approximation`_, `cluster.FeatureAgglomeration`_
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636 and `skrebate`_ for parameter in the pre-processing steps.
0
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637
8
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638 **Search parameter list** can be list, numpy array, or distribution. The evaluation of settings supports operations in Math,
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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639 list comprehension, numpy.arange(np_arange), most numpy.random(e.g., np_random_uniform) and some scipy.stats(e.g., scipy_stats_zipf) classes or functions, and others.
0
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640
8
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641 Examples:
0
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642
8
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643 - [3, 5, 7, 9]
0
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644
8
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645 - list(range(50, 1001, 50))
0
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646
8
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647 - np_arange(0.01, 1, 0.1)
0
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648
8
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649 - np_random_choice(list(range(1, 51)) + [None], size=20)
0
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650
8
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651 - scipy_stats_randin(1, 11)
7
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652
8
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653 **Estimator / Preprocessor search (additional `:` in the front)**::
7
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654
8
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655 : [sklearn_tree.DecisionTreeRegressor(), sklearn_tree.ExtraTreeRegressor()]
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656
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657 : [sklearn_feature_selection.SelectKBest(), sklearn_feature_selection.VarianceThreshold(),
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658 skrebate_ReliefF(), sklearn_preprocessing.RobustScaler()]
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659
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660 **Hot number/keyword for preprocessors**::
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661
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662 0 sklearn_preprocessing.StandardScaler(copy=True, with_mean=True, with_std=True)
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663 1 sklearn_preprocessing.Binarizer(copy=True, threshold=0.0)
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664 2 sklearn_preprocessing.Imputer(axis=0, copy=True, missing_values='NaN', strategy='mean', verbose=0)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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665 3 sklearn_preprocessing.MaxAbsScaler(copy=True)
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666 4 sklearn_preprocessing.Normalizer(copy=True, norm='l2')
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667 5 sklearn_preprocessing.MinMaxScaler(copy=True, feature_range=(0, 1))
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668 6 sklearn_preprocessing.PolynomialFeatures(degree=2, include_bias=True, interaction_only=False)
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669 7 sklearn_preprocessing.RobustScaler(copy=True, quantile_range=(25.0, 75.0), with_centering=True, with_scaling=True)
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670 8 sklearn_feature_selection.SelectKBest(k=10, score_func=<function f_classif at 0x113806d90>)
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671 9 sklearn_feature_selection.GenericUnivariateSelect(mode='percentile', param=1e-05, score_func=<function f_classif at 0x113806d90>)
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672 10 sklearn_feature_selection.SelectPercentile(percentile=10, score_func=<function f_classif at 0x113806d90>)
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673 11 sklearn_feature_selection.SelectFpr(alpha=0.05, score_func=<function f_classif at 0x113806d90>)
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674 12 sklearn_feature_selection.SelectFdr(alpha=0.05, score_func=<function f_classif at 0x113806d90>)
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675 13 sklearn_feature_selection.SelectFwe(alpha=0.05, score_func=<function f_classif at 0x113806d90>)
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676 14 sklearn_feature_selection.VarianceThreshold(threshold=0.0)
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677 15 sklearn_decomposition.FactorAnalysis(copy=True, iterated_power=3, max_iter=1000, n_components=None,
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678 noise_variance_init=None, random_state=0, svd_method='randomized', tol=0.01)
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679 16 sklearn_decomposition.FastICA(algorithm='parallel', fun='logcosh', fun_args=None,
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680 max_iter=200, n_components=None, random_state=0, tol=0.0001, w_init=None, whiten=True)
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681 17 sklearn_decomposition.IncrementalPCA(batch_size=None, copy=True, n_components=None, whiten=False)
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682 18 sklearn_decomposition.KernelPCA(alpha=1.0, coef0=1, copy_X=True, degree=3, eigen_solver='auto',
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683 fit_inverse_transform=False, gamma=None, kernel='linear', kernel_params=None, max_iter=None,
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684 n_components=None, random_state=0, remove_zero_eig=False, tol=0)
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685 19 sklearn_decomposition.LatentDirichletAllocation(batch_size=128, doc_topic_prior=None, evaluate_every=-1, learning_decay=0.7,
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686 learning_method=None, learning_offset=10.0, max_doc_update_iter=100, max_iter=10, mean_change_tol=0.001, n_components=10,
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687 n_topics=None, perp_tol=0.1, random_state=0, topic_word_prior=None, total_samples=1000000.0, verbose=0)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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688 20 sklearn_decomposition.MiniBatchDictionaryLearning(alpha=1, batch_size=3, dict_init=None, fit_algorithm='lars',
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
689 n_components=None, n_iter=1000, random_state=0, shuffle=True, split_sign=False, transform_algorithm='omp',
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
690 transform_alpha=None, transform_n_nonzero_coefs=None, verbose=False)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
691 21 sklearn_decomposition.MiniBatchSparsePCA(alpha=1, batch_size=3, callback=None, method='lars', n_components=None,
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
692 n_iter=100, random_state=0, ridge_alpha=0.01, shuffle=True, verbose=False)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
693 22 sklearn_decomposition.NMF(alpha=0.0, beta_loss='frobenius', init=None, l1_ratio=0.0, max_iter=200,
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
694 n_components=None, random_state=0, shuffle=False, solver='cd', tol=0.0001, verbose=0)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
695 23 sklearn_decomposition.PCA(copy=True, iterated_power='auto', n_components=None, random_state=0, svd_solver='auto', tol=0.0, whiten=False)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
696 24 sklearn_decomposition.SparsePCA(U_init=None, V_init=None, alpha=1, max_iter=1000, method='lars',
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
697 n_components=None, random_state=0, ridge_alpha=0.01, tol=1e-08, verbose=False)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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698 25 sklearn_decomposition.TruncatedSVD(algorithm='randomized', n_components=2, n_iter=5, random_state=0, tol=0.0)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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699 26 sklearn_kernel_approximation.Nystroem(coef0=None, degree=None, gamma=None, kernel='rbf',
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
700 kernel_params=None, n_components=100, random_state=0)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
701 27 sklearn_kernel_approximation.RBFSampler(gamma=1.0, n_components=100, random_state=0)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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702 28 sklearn_kernel_approximation.AdditiveChi2Sampler(sample_interval=None, sample_steps=2)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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703 29 sklearn_kernel_approximation.SkewedChi2Sampler(n_components=100, random_state=0, skewedness=1.0)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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704 30 sklearn_cluster.FeatureAgglomeration(affinity='euclidean', compute_full_tree='auto', connectivity=None,
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
705 linkage='ward', memory=None, n_clusters=2, pooling_func=<function mean at 0x113078ae8>)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
706 31 skrebate_ReliefF(discrete_threshold=10, n_features_to_select=10, n_neighbors=100, verbose=False)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
707 32 skrebate_SURF(discrete_threshold=10, n_features_to_select=10, verbose=False)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
708 33 skrebate_SURFstar(discrete_threshold=10, n_features_to_select=10, verbose=False)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
709 34 skrebate_MultiSURF(discrete_threshold=10, n_features_to_select=10, verbose=False)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
710 35 skrebate_MultiSURFstar(discrete_threshold=10, n_features_to_select=10, verbose=False)
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
711 'sk_prep_all': All sklearn preprocessing estimators, i.e., 0-7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
712 'fs_all': All feature_selection estimators, i.e., 8-14
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
713 'decomp_all': All decomposition estimators, i.e., 15-25
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
714 'k_appr_all': All kernel_approximation estimators, i.e., 26-29
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
715 'reb_all': All skrebate estimators, i.e., 31-35
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
716 'all_0': All except the imbalanced-learn samplers, i.e., 0-35
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
717 'imb_all': All imbalanced-learn sampling methods, i.e., 36-54.
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
718 **CAUTION**: Mix of imblearn and other preprocessors may not work.
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
719 None: opt out of preprocessor
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
720
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
721 Support mix (CAUTION: Mix of imblearn and other preprocessors may not work), e.g.::
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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parents: 6
diff changeset
722
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
723 : [None, 'sk_prep_all', 22, 'k_appr_all', sklearn_feature_selection.SelectKBest(k=50)]
0
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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diff changeset
724
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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diff changeset
725
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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parents: 7
diff changeset
726
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
727 **Whether to do train_test_split?**
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
728
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
729 Please refer to `https://scikit-learn.org/stable/modules/cross_validation.html#cross-validation`_
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
730
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
731
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
732 .. image:: https://scikit-learn.org/stable/_images/grid_search_cross_validation.png
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
733 :height: 300
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
734 :width: 400
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
735
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
736
0
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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diff changeset
737 .. _`Scikit-learn model_selection GridSearchCV`: http://scikit-learn.org/stable/modules/generated/sklearn.model_selection.GridSearchCV.html
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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738 .. _`Scikit-learn model_selection RandomizedSearchCV`: http://scikit-learn.org/stable/modules/generated/sklearn.model_selection.RandomizedSearchCV.html
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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739 .. _`Tuning hyper-parameters`: http://scikit-learn.org/stable/modules/grid_search.html
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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diff changeset
740
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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diff changeset
741 .. _`svm`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.svm
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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742 .. _`linear_model`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.linear_model
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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743 .. _`ensemble`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.ensemble
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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744 .. _`naive_bayes`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.naive_bayes
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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745 .. _`tree`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.tree
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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746 .. _`neighbors`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.neighbors
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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747 .. _`xgboost`: https://xgboost.readthedocs.io/en/latest/python/python_api.html
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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diff changeset
748
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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749 .. _`sklearn.preprocessing`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.preprocessing
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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750 .. _`feature_selection`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.feature_selection
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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751 .. _`decomposition`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.decomposition
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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752 .. _`kernel_approximation`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.kernel_approximation
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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753 .. _`cluster.FeatureAgglomeration`: http://scikit-learn.org/stable/modules/generated/sklearn.cluster.FeatureAgglomeration.html
3
a58ad596036f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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754 .. _`skrebate`: https://epistasislab.github.io/scikit-rebate/using/
8
51cabe6d4ca6 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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diff changeset
755 .. _`https://scikit-learn.org/stable/modules/cross_validation.html#cross-validation`: https://scikit-learn.org/stable/modules/cross_validation.html#cross-validation
0
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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756
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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757 ]]>
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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758 </help>
4
924af5cfe4c2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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diff changeset
759 <expand macro="sklearn_citation">
924af5cfe4c2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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diff changeset
760 <expand macro="skrebate_citation"/>
924af5cfe4c2 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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diff changeset
761 <expand macro="xgboost_citation"/>
7
bd2ef98a56be planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff changeset
762 <expand macro="imblearn_citation"/>
4
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diff changeset
763 </expand>
0
f6802e2b5bc7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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764 </tool>