Mercurial > repos > bgruening > sklearn_discriminant_classifier

annotate keras_macros.xml @ 31:3b7219e0c6cf draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
author bgruening
date Fri, 09 Aug 2019 06:15:47 -0400
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children 5dd4f7c3b2e6
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31
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1 <macros>
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2 <token name="@KERAS_VERSION@">0.4.0</token>
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3
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4 <xml name="macro_stdio">
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5 <stdio>
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6 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error"/>
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7 </stdio>
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8 </xml>
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9
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10 <xml name="keras_optimizer_common" token_lr="0.01">
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11 <section name="optimizer_options" title="Optimizer Advanced Options" expanded="false">
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12 <param argument="lr" type="float" value="@LR@" optional="true" label="Learning rate" help="float >= 0"/>
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13 <yield/>
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14 <!--param argument="clipnorm" type="float" value="" optional="true" label="clipnorm" help="float >= 0"/-->
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15 <!--param argument="clipvalue" type="float" value="" optional="true" label="clipvalue" help="float >= 0"/-->
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16 </section>
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17 </xml>
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18
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19 <xml name="keras_optimizer_common_more" token_lr="0.001">
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20 <expand macro="keras_optimizer_common" lr="@LR@">
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21 <param argument="epsilon" type="float" value="" label="epsilon" optional="true" help="Fuzz factor. If `None`, defaults to `K.epsilon()`"/>
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22 <param argument="decay" type="float" value="0" optional="true" label="decay" help="Learning rate decay over each update."/>
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23 <yield/>
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24 </expand>
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25 </xml>
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26
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27 <xml name="keras_activations">
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28 <param argument="activation" type="select" label="Activation function">
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29 <option value="linear" selected="true">None / linear (default)</option>
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30 <option value="softmax">softmax</option>
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31 <option value="elu">elu</option>
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32 <option value="selu">selu</option>
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33 <option value="softplus">softplus</option>
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34 <option value="softsign">softsign</option>
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35 <option value="relu">relu</option>
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36 <option value="tanh">tanh</option>
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37 <option value="sigmoid">sigmoid</option>
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38 <option value="hard_sigmoid">hard_sigmoid</option>
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39 <option value="exponential">tanh</option>
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40 </param>
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41 </xml>
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42
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43 <xml name="keras_initializers" token_argument="kernel_initializer" token_default_kernel="false" token_default_bias="false" token_default_embeddings="false">
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44 <param argument="@ARGUMENT@" type="select" label="@ARGUMENT@">
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45 <option value="zeros" selected="@DEFAULT_BIAS@">zero / zeros / Zeros</option>
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46 <option value="ones">one / ones / Ones</option>
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47 <option value="constant">constant / Constant</option>
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48 <option value="random_normal">normal / random_normal / RandomNormal</option>
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49 <option value="random_uniform" selected="@DEFAULT_EMBEDDINGS@">uniform / random_uniform / RandomUniform</option>
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50 <option value="truncated_normal">truncated_normal / TruncatedNormal</option>
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51 <option value="orthogonal">orthogonal / Orthogonal</option>
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52 <option value="identity">identity / Identity</option>
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53 <option value="glorot_normal">glorot_normal</option>
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54 <option value="glorot_uniform" selected="@DEFAULT_KERNEL@">glorot_uniform</option>
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55 <option value="he_normal">he_normal</option>
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56 <option value="he_uniform">he_uniform</option>
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57 <option value="lecun_normal">lecun_normal</option>
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58 <option value="lecun_uniform">lecun_uniform</option>
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59 </param>
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60 </xml>
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61
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62 <xml name="keras_regularizers" token_argument="kernel_regularizer">
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63 <param argument="@ARGUMENT@" type="text" value="(0. , 0.)" optional="true" label="@ARGUMENT@"
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64 help="(l1, l2). l1/l2: float; L1/l2 regularization factor. (0., 0.) is equivalent to `None`"/>
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65 </xml>
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66
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67 <xml name="keras_constraints_options">
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68 <section name="constraint_options" title="Constraint Advanced Options" expanded="false">
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69 <yield/>
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70 <param argument="axis" type="text" value="0" help="Integer or list of integers. axis along which to calculate weight norms">
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71 <sanitizer>
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72 <valid initial="default">
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73 <add value="["/>
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74 <add value="]"/>
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75 </valid>
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76 </sanitizer>
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77 </param>
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78 </section>
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79 </xml>
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80
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81 <xml name="keras_constraints" token_argument="kernel_constraint">
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82 <conditional name="@ARGUMENT@">
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83 <param argument="constraint_type" type="select" label="@ARGUMENT@">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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84 <option value="None" selected="true">None (default)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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85 <option value="MaxNorm">maxnorm / max_norm / MaxNorm</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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86 <option value="NonNeg">nonneg / non_neg / NonNeg</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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87 <option value="UnitNorm">unitnorm / unit_norm / UnitNorm</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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88 <option value="MinMaxNorm">min_max_norm / MinMaxNorm</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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89 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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90 <when value="None"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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91 <when value="MaxNorm">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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92 <expand macro="keras_constraints_options">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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93 <param argument="max_value" type="float" value="2" help="the maximum norm for the incoming weights."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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94 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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95 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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96 <when value="NonNeg">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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97 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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98 <when value="UnitNorm">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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99 <expand macro="keras_constraints_options"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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100 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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101 <when value="MinMaxNorm">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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102 <expand macro="keras_constraints_options">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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103 <param argument="min_value" type="float" value="0." help="the minimum norm for the incoming weights."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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104 <param argument="max_value" type="float" value="1." help="the maximum norm for the incoming weights."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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105 <param argument="max_value" type="float" value="1." help="rate for enforcing the constraint."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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106 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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107 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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108 </conditional>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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109 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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110
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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111 <xml name="keras_layer_types_core">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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112 <option value="Dense">Dense</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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113 <option value="Activation">Activation</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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114 <option value="Dropout">Dropout</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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115 <option value="Flatten">Flatten</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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116 <option value="Reshape">Reshape</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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117 <option value="Permute">Permute</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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118 <option value="RepeatVector">RepeatVector</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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119 <!--option value="Lambda">Lambda - Not supported</option-->
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120 <option value="ActivityRegularization">ActivityRegularization</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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121 <option value="Masking">Masking</option>
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122 <option value="SpatialDropout1D">SpatialDropout1D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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123 <option value="SpatialDropout2D">SpatialDropout2D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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124 <option value="SpatialDropout3D">SpatialDropout3D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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125 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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126
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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127 <xml name="keras_layer_types_Convolutional">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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128 <option value="Conv1D">Conv1D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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129 <option value="Conv2D">Conv2D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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130 <option value="SeparableConv1D">SeparableConv1D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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131 <option value="SeparableConv2D">SeparableConv2D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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132 <option value="DepthwiseConv2D">DepthwiseConv2D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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133 <option value="Conv2DTranspose">Conv2DTranspose</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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134 <option value="Conv3D">Conv3D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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135 <option value="Conv3DTranspose">Conv3DTranspose</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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136 <option value="Cropping1D">Cropping1D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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137 <option value="Cropping2D">Cropping2D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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138 <option value="Cropping3D">Cropping3D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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139 <option value="UpSampling1D">UpSampling1D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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140 <option value="UpSampling2D">UpSampling2D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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141 <option value="UpSampling3D">UpSampling3D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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142 <option value="ZeroPadding1D">ZeroPadding1D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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143 <option value="ZeroPadding2D">ZeroPadding2D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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144 <option value="ZeroPadding3D">ZeroPadding3D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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145 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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146
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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147 <xml name="keras_layer_types_Pooling">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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148 <option value="MaxPooling1D">MaxPooling1D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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149 <option value="MaxPooling2D">MaxPooling2D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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150 <option value="MaxPooling3D">MaxPooling3D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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151 <option value="AveragePooling1D">AveragePooling1D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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152 <option value="AveragePooling2D">AveragePooling2D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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153 <option value="AveragePooling3D">AveragePooling3D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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154 <option value="GlobalMaxPooling1D">GlobalMaxPooling1D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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155 <option value="GlobalAveragePooling1D">GlobalAveragePooling1D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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156 <option value="GlobalMaxPooling2D">GlobalMaxPooling2D</option>
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157 <option value="GlobalAveragePooling2D">GlobalAveragePooling2D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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158 <option value="GlobalMaxPooling3D">GlobalMaxPooling3D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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159 <option value="GlobalAveragePooling3D">GlobalAveragePooling3D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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160 </xml>
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161
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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162 <xml name="keras_layer_types_locally_connected">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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163 <option value="LocallyConnected1D">LocallyConnected1D</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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164 <option value="LocallyConnected2D">LocallyConnected2D</option>
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165 </xml>
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166
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167 <xml name="keras_layer_types_recurrent">
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168 <option value="RNN">RNN</option>
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169 <option value="Masking">Masking</option>
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170 <option value="SimpleRNN">SimpleRNN</option>
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171 <option value="GRU">GRU</option>
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172 <option value="LSTM">LSTM</option>
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173 <option value="ConvLSTM2D">ConvLSTM2D</option>
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174 <option value="ConvLSTM2DCell">ConvLSTM2DCell</option>
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175 <option value="SimpleRNNCell">SimpleRNNCell</option>
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176 <option value="GRUCell">GRUCell</option>
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177 <option value="LSTMCell">LSTMCell</option>
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178 <option value="CuDNNGRU">CuDNNGRU</option>
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179 <option value="CuDNNLSTM">Dense</option>
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180 </xml>
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181
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182 <xml name="keras_layer_types_embedding">
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183 <option value="Embedding">Embedding</option>
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184 </xml>
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185
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186 <xml name="keras_layer_types_advanced_activations">
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187 <option value="LeakyReLU">LeakyReLU</option>
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188 <option value="PReLU">PReLU</option>
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189 <option value="ELU">ELU</option>
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190 <option value="ThresholdedReLU">ThresholdedReLU</option>
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191 <option value="Softmax">Softmax</option>
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192 <option value="ReLU">ReLU</option>
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193 </xml>
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194
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195 <xml name="keras_layer_types_normalization">
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196 <option value="BatchNormalization">BatchNormalization</option>
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197 </xml>
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198
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199 <xml name="keras_layer_types_noise">
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200 <option value="GaussianNoise">GaussianNoise</option>
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201 <option value="GaussianDropout">GaussianDropout</option>
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202 <option value="AlphaDropout">AlphaDropout</option>
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203 </xml>
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204
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205 <xml name="keras_layer_types_merge">
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206 <option value="Add">Add</option>
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207 <option value="Subtract">Subtract</option>
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208 <option value="Multiply">Multiply</option>
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209 <option value="Average">Average</option>
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210 <option value="Maximum">Maximum</option>
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211 <option value="Minimum">Minimum</option>
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212 <option value="Concatenate">Concatenate</option>
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213 <option value="Dot">Dot</option>
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214 </xml>
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215
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216 <!--Core Layers-->
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217
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218 <xml name="layer_Dense">
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219 <param argument="units" type="integer" value="" optional="false" label="units" help="Positive integer, dimensionality of the output space."/>
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220 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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221 <expand macro="keras_activations"/>
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222 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true" />
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223 <expand macro="keras_initializers" default_kernel="true"/>
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224 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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225 <expand macro="keras_regularizers"/>
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226 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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227 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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228 <expand macro="keras_constraints"/>
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229 <expand macro="keras_constraints" argument="bias_constraint"/>
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230 </section>
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231 <yield/>
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232 </xml>
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233
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234 <xml name="layer_Dropout">
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235 <param argument="rate" type="float" value="" min="0." max="1.0" help="Fraction of the input units to drop."/>
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236 <param argument="noise_shape" type="text" value="" help="1D integer tensor representing the shape of the
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237 binary dropout mask that will be multiplied with the input."/>
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238 <param argument="seed" type="integer" value="" min="0" optional="true" help="A Python integer to use as random seed."/>
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239 <yield/>
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240 </xml>
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241
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242 <xml name="layer_Flatten">
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243 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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244 <option value="channels_last">channels_last</option>
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245 <option value="channels_first">channels_first</option>
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246 </param>
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247 <yield/>
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248 </xml>
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249
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250 <xml name="layer_Input">
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251 <param argument="shape" type="text" value="" help="A shape tuple (integer), not including the batch size.For instance, `shape=(32,)`"/>
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252 <!--param argument="batch_shape" type="text" value="" optional="true" help="A shape tuple (integer), including the batch size.For instance, `batch_shape=(10, 32)`"/-->
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253 <param argument="name" type="text" value="" optional="true" help="An optional string name for the layer. Unique. autogenerated if it isn't provided."/>
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254 <param argument="dtype" type="select" help="The data type expected by the input">
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255 <option value="float32" selected="true">float32</option>
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256 <option value="float64">float64</option>
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257 <option value="int32">int32</option>
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258 <option value="int64">int64</option>
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259 <!--TODO add more DTYPEs-->
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260 </param>
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261 <param argument="sparse" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
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262 <!--param argument="tensor" type="data" format="zip" help="Optional existing tensor to wrap into the `Input` layer."/ -->
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263 <yield/>
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264 </xml>
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265
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266 <xml name="layer_Reshape">
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267 <param argument="target_shape" type="text" value="" help="Tuple of integers. Does not include the batch axis."/>
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268 <yield/>
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269 </xml>
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270
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271 <xml name="layer_Permute">
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272 <param argument="dims" type="text" value="" help="Tuple of integers. Permutation pattern, does not include the samples dimension.
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273 Indexing starts at 1. For instance, (2, 1) permutes the first and second dimension of the input."/>
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274 <yield/>
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275 </xml>
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276
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277 <xml name="layer_RepeatVector">
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278 <param argument="n" type="integer" value="" help="repetition factor"/>
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279 </xml>
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280
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281 <xml name="layer_Lambda">
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282 <param argument="function" type="text" value="lambda x: " help="The function to be evaluated. Only lambda function is supported!"/>
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283 <yield/>
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284 </xml>
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285
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286 <xml name="layer_ActivityRegularization">
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287 <param argument="l1" type="float" value="0." min="0." help="L1 regularization factor (positive float)."/>
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288 <param argument="l2" type="float" value="0." min="0." help="L2 regularization factor (positive float)."/>
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289 <yield/>
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290 </xml>
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291
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292 <xml name="layer_Masking">
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293 <param argument="mask_value" type="float" value="0." help="Masks a sequence by using a mask value to skip timesteps."/>
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294 <yield/>
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295 </xml>
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296
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297 <xml name="layer_SpatialDropout1D">
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298 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/>
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299 <yield/>
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300 </xml>
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301
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302 <xml name="layer_SpatialDropout2D">
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303 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/>
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304 <param argument="data_format" type="select">
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305 <option value="channels_last" selected="true">channels_last - the channels dimension (the depth) is at index 3</option>
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306 <option value="channels_first">channels_first - the channels dimension (the depth) is at index 1</option>
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307 </param>
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308 <yield/>
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309 </xml>
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310
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311 <xml name="layer_SpatialDropout3D">
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312 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/>
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313 <param argument="data_format" type="select">
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314 <option value="channels_last" selected="true">channels_last - the channels dimension (the depth) is at index 4</option>
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315 <option value="channels_first">channels_first - the channels dimension (the depth) is at index 1</option>
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316 </param>
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317 <yield/>
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318 </xml>
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319
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320 <!--Convolutional Layers-->
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321
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322 <xml name="layer_Conv1D">
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323 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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324 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/>
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325 <param argument="strides" type="text" value="1" help="An integer or tuple/list of a single integer, specifying the stride length of the convolution."/>
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326 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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327 <param argument="padding" type="select" help="">
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328 <option value="valid" selected="true">valid - no padding</option>
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329 <option value="same">same - output has the same length as the original input</option>
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330 <option value="causal">causal - causal (dilated) convolutions</option>
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331 </param>
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332 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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333 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
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334 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
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335 </param>
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336 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of a single integer, specifying the dilation rate to use for dilated convolution."/>
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337 <expand macro="keras_activations"/>
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338 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
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339 <expand macro="keras_initializers" default_kernel="true"/>\
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340 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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341 <expand macro="keras_regularizers"/>
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342 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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343 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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344 <expand macro="keras_constraints"/>
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345 <expand macro="keras_constraints" argument="bias_constraint"/>
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346 </section>
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347 <yield/>
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348 </xml>
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349
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350 <xml name="layer_Conv2D">
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351 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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352 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/>
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353 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/>
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354 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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355 <param argument="padding" type="select" help="">
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356 <option value="valid" selected="true">valid - no padding</option>
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357 <option value="same">same - output has the same length as the original input</option>
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358 <!--option value="causal">causal - causal (dilated) convolutions</option-->
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359 </param>
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360 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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361 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
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362 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
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363 </param>
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364 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/>
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365 <expand macro="keras_activations"/>
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366 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
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367 <expand macro="keras_initializers" default_kernel="true"/>\
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368 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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369 <expand macro="keras_regularizers"/>
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370 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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371 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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372 <expand macro="keras_constraints"/>
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373 <expand macro="keras_constraints" argument="bias_constraint"/>
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374 </section>
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375 <yield/>
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376 </xml>
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377
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378 <xml name="layer_SeparableConv1D">
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379 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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380 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/>
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381 <param argument="strides" type="text" value="1" help="An integer or tuple/list of single integer, specifying the stride length of the convolution. "/>
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382 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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383 <param argument="padding" type="select" help="">
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384 <option value="valid" selected="true">valid - no padding</option>
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385 <option value="same">same - output has the same length as the original input</option>
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386 <!--option value="causal">causal - causal (dilated) convolutions</option-->
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387 </param>
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388 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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389 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
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390 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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391 </param>
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392 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of a single integer, specifying the dilation rate to use for dilated convolution. "/>
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393 <param argument="depth_multiplier" type="integer" value="1" help="The number of depthwise convolution output channels for each input channel."/>
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394 <expand macro="keras_activations"/>
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395 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
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396 <expand macro="keras_initializers" argument="depthwise_initializer" default_kernel="true"/>
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397 <expand macro="keras_initializers" argument="pointwise_initializer" default_kernel="true"/>
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398 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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399 <expand macro="keras_regularizers" argument="depthwise_regularizer"/>
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400 <expand macro="keras_regularizers" argument="pointwise_regularizer"/>
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401 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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402 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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403 <expand macro="keras_constraints" argument="depthwise_constraint"/>
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404 <expand macro="keras_constraints" argument="pointwise_constraint"/>
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405 <expand macro="keras_constraints" argument="bias_constraint"/>
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406 </section>
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407 <yield/>
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408 </xml>
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409
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410 <xml name="layer_SeparableConv2D">
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411 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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412 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/>
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413 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/>
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414 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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415 <param argument="padding" type="select" help="">
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416 <option value="valid" selected="true">valid - no padding</option>
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417 <option value="same">same - output has the same length as the original input</option>
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418 <!--option value="causal">causal - causal (dilated) convolutions</option-->
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419 </param>
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420 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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421 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
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422 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
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423 </param>
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424 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/>
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425 <param argument="depth_multiplier" type="integer" value="1" help="The number of depthwise convolution output channels for each input channel."/>
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426 <expand macro="keras_activations"/>
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427 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
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428 <expand macro="keras_initializers" argument="depthwise_initializer" default_kernel="true"/>
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429 <expand macro="keras_initializers" argument="pointwise_initializer" default_kernel="true"/>
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430 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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431 <expand macro="keras_regularizers" argument="depthwise_regularizer"/>
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432 <expand macro="keras_regularizers" argument="pointwise_regularizer"/>
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433 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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434 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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435 <expand macro="keras_constraints" argument="depthwise_constraint"/>
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436 <expand macro="keras_constraints" argument="pointwise_constraint"/>
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437 <expand macro="keras_constraints" argument="bias_constraint"/>
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438 </section>
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439 <yield/>
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440 </xml>
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441
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442 <xml name="layer_DepthwiseConv2D">
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443 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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444 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/>
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445 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/>
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446 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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447 <param argument="padding" type="select" help="">
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448 <option value="valid" selected="true">valid - no padding</option>
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449 <option value="same">same - output has the same length as the original input</option>
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450 <!--option value="causal">causal - causal (dilated) convolutions</option-->
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451 </param>
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452 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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453 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
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454 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
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455 </param>
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456 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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457 <param argument="depth_multiplier" type="integer" value="1" help="The number of depthwise convolution output channels for each input channel."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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458 <expand macro="keras_activations"/>
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459 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
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460 <expand macro="keras_initializers" argument="depthwise_initializer" default_kernel="true"/>
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461 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
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462 <expand macro="keras_regularizers" argument="depthwise_regularizer"/>
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463 <expand macro="keras_regularizers" argument="pointwise_regularizer"/>
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464 <expand macro="keras_regularizers" argument="bias_regularizer"/>
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465 <expand macro="keras_regularizers" argument="activity_regularizer"/>
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466 <expand macro="keras_constraints" argument="depthwise_constraint"/>
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467 <expand macro="keras_constraints" argument="bias_constraint"/>
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468 </section>
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469 <yield/>
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470 </xml>
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471
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472 <xml name="layer_Conv2DTranspose">
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473 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
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474 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/>
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475 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/>
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476 <section name="layer_options" title="Layer Advanced Options" expanded="false">
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477 <param argument="padding" type="select" help="">
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478 <option value="valid" selected="true">valid - no padding</option>
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479 <option value="same">same - output has the same length as the original input</option>
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480 <!--option value="causal">causal - causal (dilated) convolutions</option-->
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481 </param>
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482 <param argument="output_padding" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the amount of padding along the height and width of the output tensor."/>
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483 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
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484 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
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485 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
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486 </param>
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487 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/>
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488 <expand macro="keras_activations"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
489 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
490 <expand macro="keras_initializers" default_kernel="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
491 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
492 <expand macro="keras_regularizers" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
493 <expand macro="keras_regularizers" argument="bias_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
494 <expand macro="keras_regularizers" argument="activity_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
495 <expand macro="keras_constraints"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
496 <expand macro="keras_constraints" argument="bias_constraint"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
497 </section>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
498 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
499 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
500
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
501 <xml name="layer_Conv3D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
502 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
503 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the depth, height and width of the 3D convolution window."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
504 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 3 integers, specifying the strides of the convolution along each spatial dimension."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
505 <section name="layer_options" title="Layer Advanced Options" expanded="false">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
506 <param argument="padding" type="select" help="">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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507 <option value="valid" selected="true">valid - no padding</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
508 <option value="same">same - output has the same length as the original input</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
509 <!--option value="causal">causal - causal (dilated) convolutions</option-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
510 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
511 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
512 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
513 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
514 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
515 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 3 integers, specifying the dilation rate to use for dilated convolution."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
516 <expand macro="keras_activations"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
517 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
518 <expand macro="keras_initializers" default_kernel="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
519 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
520 <expand macro="keras_regularizers" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
521 <expand macro="keras_regularizers" argument="bias_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
522 <expand macro="keras_regularizers" argument="activity_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
523 <expand macro="keras_constraints"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
524 <expand macro="keras_constraints" argument="bias_constraint"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
525 </section>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
526 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
527 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
528
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
529 <xml name="layer_Conv3DTranspose">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
530 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
531 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the depth, height and width of the 3D convolution window."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
532 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 3 integers, specifying the strides of the convolution along each spatial dimension."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
533 <section name="layer_options" title="Layer Advanced Options" expanded="false">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
534 <param argument="padding" type="select" help="">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
535 <option value="valid" selected="true">valid - no padding</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
536 <option value="same">same - output has the same length as the original input</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
537 <!--option value="causal">causal - causal (dilated) convolutions</option-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
538 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
539 <param argument="output_padding" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the amount of padding along the depth, height, and width. "/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
540 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
541 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
542 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
543 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
544 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 3 integers, specifying the dilation rate to use for dilated convolution."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
545 <expand macro="keras_activations"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
546 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
547 <expand macro="keras_initializers" default_kernel="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
548 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
549 <expand macro="keras_regularizers" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
550 <expand macro="keras_regularizers" argument="bias_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
551 <expand macro="keras_regularizers" argument="activity_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
552 <expand macro="keras_constraints"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
553 <expand macro="keras_constraints" argument="bias_constraint"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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554 </section>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
555 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
556 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
557
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
558 <xml name="layer_Cropping1D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
559 <param argument="cropping" type="text" value="(1, 1)" help="int or tuple of int (length 2) How many units should be trimmed off at the beginning and end of the cropping dimension (axis 1).
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
560 If a single int is provided, the same value will be used for both."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
561 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
562 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
563
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
564 <xml name="layer_Cropping2D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
565 <param argument="cropping" type="text" value="((0, 0), (0, 0))" help="int, or tuple of 2 ints, or tuple of 2 tuples of 2 ints."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
566 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
567 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
568 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
569 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
570 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
571 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
572
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
573 <xml name="layer_Cropping3D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
574 <param argument="cropping" type="text" value="((1, 1), (1, 1), (1, 1))" help="int, or tuple of 3 ints, or tuple of 3 tuples of 2 ints."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
575 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
576 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
577 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
578 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
579 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
580 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
581
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
582 <xml name="layer_UpSampling1D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
583 <param argument="size" type="integer" value="2" min="0" help="integer. Upsampling factor."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
584 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
585 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
586
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
587 <xml name="layer_UpSampling2D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
588 <param argument="size" type="text" value="(2, 2)" help="int, or tuple of 2 integers. The upsampling factors for rows and columns."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
589 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
590 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
591 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
592 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
593 <param argument="interpolation" type="select">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
594 <option value="nearest" selected="true">nearest</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
595 <option value="bilinear">bilinear</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
596 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
597 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
598 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
599
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
600 <xml name="layer_UpSampling3D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
601 <param argument="size" type="text" value="(2, 2, 2)" help="int, or tuple of 3 integers. The upsampling factors for dim1, dim2 and dim3."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
602 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
603 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
604 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
605 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
606 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
607 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
608
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
609 <xml name="layer_ZeroPadding1D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
610 <param argument="padding" type="text" value="1" help="int, or tuple of int (length 2)"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
611 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
612 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
613
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
614 <xml name="layer_ZeroPadding2D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
615 <param argument="padding" type="text" value="(1, 1)" help="int, or tuple of 2 ints, or tuple of 2 tuples of 2 ints."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
616 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
617 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
618 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
619 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
620 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
621 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
622
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
623 <xml name="layer_ZeroPadding3D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
624 <param argument="padding" type="text" value="(1, 1, 1)" help="int, or tuple of 3 ints, or tuple of 3 tuples of 2 ints."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
625 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
626 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
627 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
628 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
629 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
630 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
631
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
632 <!--Pooling Layers-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
633
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
634 <xml name="layer_MaxPooling1D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
635 <param name="pool_size" type="integer" value="2" help="Integer, size of the max pooling windows."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
636 <param name="strides" type="integer" value="" help="Integer, or None. Factor by which to downscale. E.g. 2 will halve the input. If None, it will default to pool_size."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
637 <param argument="padding" type="select" >
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
638 <option value="valid" selected="true">valid - no padding</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
639 <option value="same">same - output has the same length as the original input</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
640 <!--option value="causal">causal - causal (dilated) convolutions</option-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
641 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
642 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
643 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
644 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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diff changeset
645 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
646 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
647 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
648
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
649 <xml name="layer_MaxPooling2D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
650 <param name="pool_size" type="text" value="(2, 2)" help="integer or tuple of 2 integers, factors by which to downscale (vertical, horizontal)"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
651 <param name="strides" type="text" value="" help="Integer, tuple of 2 integers, or None. Strides values. If None, it will default to pool_size."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
652 <param argument="padding" type="select" >
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
653 <option value="valid" selected="true">valid - no padding</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
654 <option value="same">same - output has the same length as the original input</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
655 <!--option value="causal">causal - causal (dilated) convolutions</option-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
656 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
657 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
658 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
659 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
660 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
661 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
662 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
663
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
664 <xml name="layer_MaxPooling3D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
665 <param name="pool_size" type="text" value="(2, 2, 2)" help="tuple of 3 integers, factors by which to downscale (dim1, dim2, dim3).
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
666 (2, 2, 2) will halve the size of the 3D input in each dimension."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
667 <param name="strides" type="text" value="" help="tuple of 3 integers, or None. If None, it will default to pool_size."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
668 <param argument="padding" type="select" >
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
669 <option value="valid" selected="true">valid - no padding</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
670 <option value="same">same - output has the same length as the original input</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
671 <!--option value="causal">causal - causal (dilated) convolutions</option-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
672 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
673 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
674 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
675 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
676 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
677 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
678 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
679
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
680 <xml name="layer_AveragePooling1D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
681 <param name="pool_size" type="integer" value="2" help="Integer, size of the max pooling windows."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
682 <param name="strides" type="integer" value="" help="Integer, or None. Factor by which to downscale. E.g. 2 will halve the input. If None, it will default to pool_size."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
683 <param argument="padding" type="select" >
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
684 <option value="valid" selected="true">valid - no padding</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
685 <option value="same">same - output has the same length as the original input</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
686 <!--option value="causal">causal - causal (dilated) convolutions</option-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
687 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
688 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
689 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
690 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
691 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
692 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
693 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
694
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
695 <xml name="layer_AveragePooling2D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
696 <param name="pool_size" type="text" value="(2, 2)" help="integer or tuple of 2 integers, factors by which to downscale (vertical, horizontal)"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
697 <param name="strides" type="text" value="" help=" Integer, tuple of 2 integers, or None. Strides values. If None, it will default to pool_size."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
698 <param argument="padding" type="select" >
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
699 <option value="valid" selected="true">valid - no padding</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
700 <option value="same">same - output has the same length as the original input</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
701 <!--option value="causal">causal - causal (dilated) convolutions</option-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
702 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
703 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
704 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
705 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
706 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
707 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
708 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
709
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
710 <xml name="layer_AveragePooling3D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
711 <param name="pool_size" type="text" value="(2, 2, 2)" help="tuple of 3 integers, factors by which to downscale (dim1, dim2, dim3).
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
712 (2, 2, 2) will halve the size of the 3D input in each dimension."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
713 <param name="strides" type="text" value="" help="tuple of 3 integers, or None. If None, it will default to pool_size."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
714 <param argument="padding" type="select" >
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
715 <option value="valid" selected="true">valid - no padding</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
716 <option value="same">same - output has the same length as the original input</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
717 <!--option value="causal">causal - causal (dilated) convolutions</option-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
718 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
719 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
720 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
721 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
722 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
723 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
724 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
725
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
726 <xml name="layer_GlobalMaxPooling1D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
727 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
728 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
729 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
730 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
731 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
732 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
733
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
734 <xml name="layer_GlobalMaxPooling2D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
735 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
736 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
737 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
738 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
739 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
740 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
741
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
742 <xml name="layer_GlobalMaxPooling3D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
743 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
744 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
745 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
746 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
747 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
748 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
749
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
750 <xml name="layer_GlobalAveragePooling1D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
751 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
752 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
753 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
754 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
755 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
756 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
757
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
758 <xml name="layer_GlobalAveragePooling2D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
759 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
760 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
761 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
762 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
763 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
764 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
765
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
766 <xml name="layer_GlobalAveragePooling3D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
767 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
768 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
769 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
770 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
771 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
772 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
773
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
774 <!--Locally-connected Layers-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
775
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
776 <xml name="layer_LocallyConnected1D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
777 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
778 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
779 <param argument="strides" type="text" value="1" help="An integer or tuple/list of a single integer, specifying the stride length of the convolution."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
780 <section name="layer_options" title="Layer Advanced Options" expanded="false">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
781 <param argument="padding" type="select" help="">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
782 <option value="valid" selected="true">valid - no padding</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
783 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
784 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
785 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
786 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
787 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
788 <expand macro="keras_activations"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
789 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
790 <expand macro="keras_initializers" default_kernel="true"/>\
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
791 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
792 <expand macro="keras_regularizers"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
793 <expand macro="keras_regularizers" argument="bias_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
794 <expand macro="keras_regularizers" argument="activity_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
795 <expand macro="keras_constraints"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
796 <expand macro="keras_constraints" argument="bias_constraint"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
797 </section>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
798 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
799 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
800
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
801 <xml name="layer_LocallyConnected2D">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
802 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
803 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
804 <param argument="strides" type="text" value="(1, 1)" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
805 <section name="layer_options" title="Layer Advanced Options" expanded="false">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
806 <param argument="padding" type="select" help="">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
807 <option value="valid" selected="true">valid - no padding</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
808 <option value="same">same - output has the same length as the original input</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
809 <!--option value="causal">causal - causal (dilated) convolutions</option-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
810 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
811 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
812 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
813 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
814 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
815 <expand macro="keras_activations"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
816 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
817 <expand macro="keras_initializers" default_kernel="true"/>\
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
818 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
819 <expand macro="keras_regularizers"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
820 <expand macro="keras_regularizers" argument="bias_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
821 <expand macro="keras_regularizers" argument="activity_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
822 <expand macro="keras_constraints"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
823 <expand macro="keras_constraints" argument="bias_constraint"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
824 </section>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
825 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
826 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
827
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
828 <!--Recurrent Layers>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
829
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
830 <xml name="layer_RNN">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
831 <param argument="cell" >
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
832 <section name="layer_options" title="Layer Advanced Options" expanded="false">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
833 <param argument="return_sequences" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
834 <param argument="return_state" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
835 <param argument="go_backwards" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
836 <param argument="stateful" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
837 <param argument="unroll" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
838 <param argument="input_dim" >
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
839 <param argument="input_length" >
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
840 </section>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
841 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
842 </xml-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
843
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
844 <xml name="layer_LSTM">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
845 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
846 <section name="layer_options" title="Layer Advanced Options" expanded="false">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
847 <expand macro="keras_activations"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
848 </section>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
849 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
850 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
851
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
852 <!--Embedding Layers-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
853
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
854 <xml name="layer_Embedding">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
855 <param argument="input_dim" type="integer" value="" min="0" help="int > 0. Size of the vocabulary, i.e. maximum integer index + 1."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
856 <param argument="output_dim" type="integer" value="" min="0" help="int >= 0. Dimension of the dense embedding."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
857 <section name="layer_options" title="Layer Advanced Options" expanded="false">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
858 <expand macro="keras_initializers" argument="embeddings_initializer" default_embeddings="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
859 <expand macro="keras_regularizers" argument="embeddings_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
860 <expand macro="keras_regularizers" argument="activity_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
861 <expand macro="keras_constraints" argument="embeddings_constraint"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
862 <param argument="mask_zero" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
863 <param argument="input_length" type="integer" value="" optional="true" min="0" help="Length of input sequences. Required if connecting Flatten then Dense layers upstream"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
864 </section>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
865 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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866 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
867
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
868 <!--Merge Layers-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
869
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
870 <xml name="layer_merge">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
871 <param name="merging_layers" type="text" value="[ ]" label="Type the layer index numbers in a list" help="List of numbers">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
872 <sanitizer>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
873 <valid initial="default">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
874 <add value="["/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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875 <add value="]"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
876 </valid>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
877 </sanitizer>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
878 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
879 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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880 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
881
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
882 <xml name="layer_Concatenate" token_type="integer" token_default_value="-1" token_help="Axis along which to concatenate.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
883 <expand macro="layer_merge">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
884 <param argument="axis" type="@TYPE@" value="@DEFAULT_VALUE@" help="@HELP@"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
885 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
886 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
887 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
888
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
889 <xml name="layer_Dot">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
890 <expand macro="layer_Concatenate" type="text" default_value="" help="Integer or tuple of integers, axis or axes along which to take the dot product.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
891 <param argument="normalize" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to L2-normalize samples along the dot product axis before taking the dot product?"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
892 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
893 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
894 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
895
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
896 <!--Advanced Activations Layers-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
897
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
898 <xml name="layer_LeakyReLU">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
899 <param argument="alpha" type="float" value="0.3" min="0." help="float >= 0. Negative slope coefficient."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
900 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
901 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
902
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
903 <xml name="layer_PReLU">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
904 <expand macro="keras_initializers" argument="alpha_initializer" default_bias="true"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
905 <expand macro="keras_regularizers" argument="alpha_regularizer"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
906 <expand macro="keras_constraints" argument="alpha_constraint"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
907 <param argument="shared_axes" type="text" value="" help="the axes along which to share learnable parameters for the activation function. E.g. [1, 2]">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
908 <sanitizer>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
909 <valid initial="default">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
910 <add value="["/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
911 <add value="]"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
912 </valid>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
913 </sanitizer>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
914 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
915 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
916 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
917
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
918 <xml name="layer_ELU">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
919 <param argument="alpha" type="float" value="1.0" help="scale for the negative factor."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
920 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
921 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
922
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
923 <xml name="layer_ThresholdedReLU">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
924 <param argument="theta" type="float" value="1.0" help="float >= 0. Threshold location of activation."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
925 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
926 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
927
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
928 <xml name="layer_Softmax">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
929 <param argument="axis" type="integer" value="-1" help="Integer, axis along which the softmax normalization is applied."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
930 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
931 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
932
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
933 <xml name="layer_ReLU">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
934 <param argument="max_value" type="float" value="" min="0." help="float >= 0. Maximum activation value."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
935 <param argument="negative_slope" type="float" value="0." min="0." help="float >= 0. Negative slope coefficient."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
936 <param argument="max_value" type="float" value="0." help="float. Threshold value for thresholded activation."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
937 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
938 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
939
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
940 <!--Normalization Layers-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
941
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
942 <!--Noise layers-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
943
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
944 <xml name="inbound_nodes_index">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
945 <param name="inbound_nodes" type="integer" value="" label="Type the index number of input layer"
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
946 help="Find the index number at the left top corner of layer configuration block"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
947 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
948
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
949
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
950 <!-- Keras CallBacks -->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
951
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
952 <xml name="keras_callbacks">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
953 <repeat name="callbacks" min="1" max="5" title="callback">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
954 <conditional name="callback_selection">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
955 <param name="callback_type" type="select" label="Choose a callback">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
956 <option value="None" selected="true">None</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
957 <option value="EarlyStopping">EarlyStopping -- Stop training when a monitored quantity has stopped improving</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
958 <!--option value="KerasTensorBoard">TensorBoard</option-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
959 <!--option value="KerasLearningRateScheduler">LearningRateScheduler</option-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
960 <!--option value="RemoteMonitor">RemoteMonitor - Stream events to a server</option> -->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
961 <!--option value="ModelCheckpoint">ModelCheckpoint - Save the model after every epoch</option>-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
962 <option value="TerminateOnNaN">TerminateOnNaN -- Terminates training when a NaN loss is encountered.</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
963 <option value="ReduceLROnPlateau">ReduceLROnPlateau -- Reduce learning rate when a metric has stopped improving</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
964 <option value="CSVLogger">CSVLogger -- Streams epoch results to a csv file</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
965 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
966 <when value="None"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
967 <when value="EarlyStopping">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
968 <expand macro="keras_callback_common_options">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
969 <param argument="min_delta" type="float" value="0" optional="true" help="Minimum change in the monitored quantity to qualify as an improvement."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
970 <param argument="patience" type="integer" value="0" min="0" help="Number of epochs with no improvement after which training will be stopped."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
971 <param argument="baseline" type="float" value="" optional="true" help="Baseline value for the monitored quantity to reach. Training will stop if the model doesn't show improvement over the baseline."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
972 <param argument="restore_best_weights" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="Whether to restore model weights from the epoch with the best value of the monitored quantity"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
973 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
974 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
975 <!--when value="TensorBoard">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
976 <param argument="histogram_freq" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
977 <param argument="batch_size" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
978 <param argument="write_graph" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
979 <param argument="write_grads" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
980 <param argument="write_images" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
981 <param argument="embeddings_layer_names" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
982 <param argument="embeddings_metadata" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
983 <param argument="embeddings_data" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
984 <param argument="update_freq" />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
985 </when-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
986 <!--when value="RemoteMonitor">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
987 <param argument="root" type="text" value="http://localhost:9000" help="Root url of the target server."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
988 <param argument="path" type="text" value="/publish/epoch/end/" help="Path relative to root to which the events will be sent. E.g., root + '/publish/epoch/end/'"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
989 <param argument="field" type="text" value="data" optional="true" help="JSON field under which the data will be stored. The field is used only if the payload is sent within a form (i.e. send_as_json is set to False)."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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990 <param argument="headers" type="text" value="" optional="true" help="Dictionary; optional custom HTTP headers.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
991 <sanitizer>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
992 <valid initial="default">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
993 <add value="{"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
994 <add value="}"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
995 </valid>
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parents:
diff changeset
996 </sanitizer>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
997 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
998 <param argument="send_as_json" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="Whether the request should be send as application/json."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
999 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1000 <when value="ModelCheckpoint">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1001 <expand macro="keras_callback_common_options">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1002 <param argument="save_best_only" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="If True, the latest best model according to the quantity monitored will not be overwritten."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1003 <param argument="save_weights_only" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" help="If True, then only the model's weights will be saved, else the full model is saved."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1004 <param argument="period" type="integer" value="1" min="1" help="Interval (number of epochs) between checkpoints."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1005 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1006 </when>-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1007 <when value="TerminateOnNaN"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1008 <when value="ReduceLROnPlateau">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1009 <expand macro="keras_callback_common_options">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1010 <param argument="factor" type="float" value="0.1" help="Factor by which the learning rate will be reduced. new_lr = lr * factor"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1011 <param argument="patience" type="integer" value="10" help="Number of epochs with no improvement after which learning rate will be reduced."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1012 <param argument="min_delta" type="float" value="0.0001" help="Threshold for measuring the new optimum, to only focus on significant changes."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1013 <param argument="cooldown" type="integer" value="0" help="Number of epochs to wait before resuming normal operation after lr has been reduced."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1014 <param argument="min_lr" type="float" value="0" help="Lower bound on the learning rate."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1015 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1016 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1017 <when value="CSVLogger"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1018 </conditional>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1019 </repeat>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1020 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1021
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1022 <xml name="keras_callback_common_options">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1023 <param argument="monitor" type="select" help="Quantity to be monitored.">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1024 <option value="val_loss" selected="true">val_loss</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1025 <option value="loss">loss</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1026 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1027 <param argument="mode" type="select">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1028 <option value="auto" selected="true">auto -- the direction is automatically inferred from the name of the monitored quantity</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1029 <option value="min">min -- training will stop when the quantity monitored has stopped decreasing</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1030 <option value="max">max -- training will stop when the quantity monitored has stopped increasing</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1031 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1032 <yield/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1033 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1034
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1035 <!--Batch online data generators-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1036
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1037 <xml name="params_fasta_dna_batch_generator">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1038 <param argument="seq_length" type="integer" value="1000" optional="true" help="Integer. Sequence length or number of bases."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1039 <param argument="shuffle" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true" help="Whether to shuffle the data between epochs."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1040 <param argument="seed" type="integer" value="" optional="true" help="Integer, random seed for data shuffling"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1041 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1042
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1043 <xml name="params_fasta_protein_batch_generator">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1044 <expand macro="params_fasta_dna_batch_generator"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1045 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1046
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diff changeset
1047 <xml name="params_genomic_interval_batch_generator">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1048 <expand macro="params_fasta_dna_batch_generator"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1049 <param argument="blacklist_regions" type="select" help="Tabix-indexed list of regions from which we should not output sequences">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1050 <option value="hg38" selected="true">hg38</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1051 <option value="hg19">hg19</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1052 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1053 <param argument="center_bin_to_predict" type="integer" value="200" optional="true" help="Query the tabix-indexed file for a region of length."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1054 <param argument="feature_thresholds" type="float" value="0.5" optional="true" help="Threshold values to determine target value."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1055 <param argument="random_state" type="integer" value="" optional="true" help="Random seed number, to control the sample position in each invertal."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1056 </xml>
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diff changeset
1057
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1058 <xml name="params_image_batch_generator">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1059 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1060
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1061
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1062 <!--composite params macro-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1063
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1064 <xml name="keras_compile_params_section">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1065 <section name="compile_params" title="Compile Parameters" expanded="true">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1066 <param name="loss" type="select" label="Select a loss function">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1067 <option value="binary_crossentropy" selected="true">binary_crossentropy</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1068 <option value="mean_squared_error">mse / MSE/ mean_squared_error</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1069 <option value="mean_absolute_error">mae / MAE / mean_absolute_error</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1070 <option value="mean_absolute_percentage_error">mape / MAPE / mean_absolute_percentage_error</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1071 <option value="mean_squared_logarithmic_error">msle / MSLE / mean_squared_logarithmic_error</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1072 <option value="squared_hinge">squared_hinge</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1073 <option value="hinge">hinge</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1074 <option value="categorical_hinge">categorical_hinge</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1075 <option value="logcosh">logcosh</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1076 <option value="categorical_crossentropy">categorical_crossentropy</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1077 <option value="sparse_categorical_crossentropy">sparse_categorical_crossentropy</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1078 <option value="kullback_leibler_divergence">kld / KLD / kullback_leibler_divergence</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1079 <option value="poisson">poisson</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1080 <option value="cosine_proximity">cosine / cosine_proximity</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1081 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1082 <conditional name="optimizer_selection">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1083 <param name="optimizer_type" type="select" label="Select an optimizer">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1084 <option value="SGD" selected="true">SGD - Stochastic gradient descent optimizer </option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1085 <option value="RMSprop">RMSprop - RMSProp optimizer </option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1086 <option value="Adagrad">Adagrad - Adagrad optimizer </option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1087 <option value="Adadelta">Adadelta - Adadelta optimizer </option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1088 <option value="Adam">Adam - Adam optimizer </option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1089 <option value="Adamax">Adamax - A variant of Adam based on the infinity norm </option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1090 <option value="Nadam">Nadam - Nesterov Adam optimizer </option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1091 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1092 <when value="SGD">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1093 <expand macro="keras_optimizer_common">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1094 <param argument="momentum" type="float" value="0" optional="true" label="Momentum"
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1095 help="float >= 0. Parameter that accelerates SGD in the relevant direction and dampens oscillations."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1096 <param argument="decay" type="float" value="0" label="Decay" optional="true" help="float &gt;= 0. Learning rate decay over each update."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1097 <param argument="nesterov" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to apply Nesterov momentum"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1098 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1099 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1100 <when value="RMSprop">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1101 <expand macro="keras_optimizer_common_more" lr="0.001">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1102 <param argument="rho" type="float" value="0.9" optional="true" label="rho" help="float &gt;= 0."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1103 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1104 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1105 <when value="Adagrad">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1106 <expand macro="keras_optimizer_common_more" lr="0.001"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1107 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1108 <when value="Adadelta">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1109 <expand macro="keras_optimizer_common_more" lr="1.0">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1110 <param argument="rho" type="float" value="0.95" optional="true" label="rho" help="float &gt;= 0."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1111 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1112 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1113 <when value="Adam">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1114 <expand macro="keras_optimizer_common_more" lr="0.001">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1115 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1116 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1117 <param argument="amsgrad" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to apply the AMSGrad variant?"
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1118 help="Refer to paper `On the Convergence of Adam and Beyond`"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1119 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1120 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1121 <when value="Adamax">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1122 <expand macro="keras_optimizer_common_more" lr="0.002">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1123 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1124 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1125 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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diff changeset
1126 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1127 <when value="Nadam">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1128 <expand macro="keras_optimizer_common" lr="0.002">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1129 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1130 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 &lt; beta &lt; 1. Generally close to 1."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1131 <param argument="epsilon" type="float" value="" label="epsilon" optional="true" help="Fuzz factor. If `None`, defaults to `K.epsilon()`"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1132 <param argument="schedule_decay" type="float" value="0.004" optional="true" label="schedule_decay" help="float, 0 &lt; beta &lt; 1."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1133 </expand>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1134 </when>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff changeset
1135 </conditional>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1136 <param name="metrics" type="select" optional="true" multiple="true" label="Select metrics">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1137 <option value="acc" selected="true">acc / accruracy</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1138 <option value="binary_accuracy">binary_accuracy</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1139 <option value="categorical_accuracy">categorical_accuracy</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1140 <option value="sparse_categorical_accuracy">sparse_categorical_accuracy</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1141 <option value="mse">mse / MSE / mean_squared_error</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1142 <option value="mae">mae / MAE / mean_absolute_error</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1143 <option value="mae">mape / MAPE / mean_absolute_percentage_error</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1144 <option value="cosine_proximity">cosine_proximity</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1145 <option value="cosine">cosine</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1146 <option value="none">none</option>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1147 </param>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1148 </section>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1149 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1150
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1151 <xml name="keras_fit_params_section">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1152 <section name="fit_params" title="Fit Parameters" expanded="true">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1153 <param name="epochs" type="integer" value="1" min="1" label="epochs"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1154 <param name="batch_size" type="integer" value="32" optional="true" label="batch_size" help="Integer or blank for 32"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1155 <param name="steps_per_epoch" type="integer" value="" optional="true" label="steps_per_epoch" help="The number of steps (batches of samples) before declaring one epoch finished and starting the next epoch. The default None is equal to the number of samples in your dataset divided by the batch size, or 1 if that cannot be determined."/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1156 <param name="validation_steps" type="integer" value="" optional="true" label="validation_steps" help="Default None. Total number of steps (batches of samples) to validate before stopping." />
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1157 <!--`validation_freq` will be available in next keras version-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1158 <!--param name="validation_freq" type="integer" value="1" optional="true" label="validation_freq" help="Integer only at current moment. If an integer, specifies how many training epochs to run before a new validation run is performed."/-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1159 <expand macro="keras_callbacks"/>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1160 </section>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1161 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1162
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1163 <!--Citation-->
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1164 <xml name="keras_citation">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1165 <citation type="bibtex">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1166 @misc{chollet2015keras,
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1167 title={Keras},
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1168 url={https://keras.io},
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1169 author={Chollet, Fran\c{c}ois and others},
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1170 year={2015},
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1171 howpublished={https://keras.io},
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1172 }
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1173 </citation>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1174 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1175
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1176 <xml name="tensorflow_citation">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1177 <citation type="bibtex">
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1178 @misc{tensorflow2015-whitepaper,
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1179 title={ {TensorFlow}: Large-Scale Machine Learning on Heterogeneous Systems},
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1180 url={https://www.tensorflow.org/},
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1181 note={Software available from tensorflow.org},
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1182 author={
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1183 Mart\'{\i}n~Abadi and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1184 Ashish~Agarwal and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1185 Paul~Barham and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1186 Eugene~Brevdo and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1187 Zhifeng~Chen and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1188 Craig~Citro and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1189 Greg~S.~Corrado and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1190 Andy~Davis and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1191 Jeffrey~Dean and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1192 Matthieu~Devin and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1193 Sanjay~Ghemawat and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1194 Ian~Goodfellow and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1195 Andrew~Harp and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1196 Geoffrey~Irving and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1197 Michael~Isard and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1198 Yangqing Jia and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1199 Rafal~Jozefowicz and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1200 Lukasz~Kaiser and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1201 Manjunath~Kudlur and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1202 Josh~Levenberg and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1203 Dandelion~Man\'{e} and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1204 Rajat~Monga and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1205 Sherry~Moore and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1206 Derek~Murray and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1207 Chris~Olah and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1208 Mike~Schuster and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1209 Jonathon~Shlens and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1210 Benoit~Steiner and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1211 Ilya~Sutskever and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1212 Kunal~Talwar and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1213 Paul~Tucker and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1214 Vincent~Vanhoucke and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1215 Vijay~Vasudevan and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1216 Fernanda~Vi\'{e}gas and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1217 Oriol~Vinyals and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1218 Pete~Warden and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff changeset
1219 Martin~Wattenberg and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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1220 Martin~Wicke and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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1221 Yuan~Yu and
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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1222 Xiaoqiang~Zheng},
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1223 year={2015},
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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1224 }
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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1225 </citation>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1226 </xml>
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1227
3b7219e0c6cf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1228 </macros>