sklearn_clf_metrics: clf_metrics.xml annotate

annotate clf_metrics.xml @ 20:ba8a518a0b21 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7

author	bgruening
date	Fri, 17 Aug 2018 12:22:43 -0400
parents	6f94f6805db4
children	97d5f4bc5bb0

rev	line source
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	1 <tool id="sklearn_clf_metrics" name="Calculate metrics" version="@VERSION@">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	2 <description>for classification performance</description>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	3 <macros>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	4 <import>main_macros.xml</import>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	5 </macros>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	6 <expand macro="python_requirements"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	7 <expand macro="macro_stdio"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	8 <version_command>echo "@VERSION@"</version_command>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	9 <command>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	10 <![CDATA[
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	11 python "$clf_metrics_script" '$inputs'
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	12 ]]>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	13 </command>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	14 <configfiles>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	15 <inputs name="inputs" />
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	16 <configfile name="clf_metrics_script">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	17 <![CDATA[
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	18 import sys
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	19 import json
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	20 import pandas
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	21 import numpy as np
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	22 from sklearn import metrics
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	23
20 ba8a518a0b21 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 16 diff changeset	24 execfile("$__tool_directory__/utils.py")
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	25
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	26 input_json_path = sys.argv[1]
16 6f94f6805db4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 13 diff changeset	27 with open(input_json_path, "r") as param_handler:
6f94f6805db4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 13 diff changeset	28 params = json.load(param_handler)
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	29
8 f361aac67330 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: 3 diff changeset	30 header='infer' if params["clf_metrics"].get("header1", None) else None
11 3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	31 column_option = params["clf_metrics"]["column_selector_options_1"]["selected_column_selector_option"]
13 86d990d8277f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6 bgruening parents: 12 diff changeset	32 if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]:
11 3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	33 c = params["clf_metrics"]["column_selector_options_1"]["col1"]
3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	34 else:
3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	35 c = None
3 6d1b3653d6a6 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76 bgruening parents: 1 diff changeset	36 y_t = read_columns(
6d1b3653d6a6 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76 bgruening parents: 1 diff changeset	37 "$clf_metrics.infile1",
11 3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	38 c = c,
3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	39 c_option = column_option,
3 6d1b3653d6a6 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76 bgruening parents: 1 diff changeset	40 sep='\t',
8 f361aac67330 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: 3 diff changeset	41 header=header,
3 6d1b3653d6a6 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76 bgruening parents: 1 diff changeset	42 parse_dates=True
6d1b3653d6a6 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76 bgruening parents: 1 diff changeset	43 )
8 f361aac67330 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: 3 diff changeset	44
f361aac67330 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: 3 diff changeset	45 header='infer' if params["clf_metrics"].get("header2", None) else None
11 3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	46 column_option = params["clf_metrics"]["column_selector_options_2"]["selected_column_selector_option2"]
13 86d990d8277f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6 bgruening parents: 12 diff changeset	47 if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]:
11 3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	48 c = params["clf_metrics"]["column_selector_options_2"]["col2"]
3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	49 else:
3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	50 c = None
3 6d1b3653d6a6 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76 bgruening parents: 1 diff changeset	51 y_p = read_columns(
6d1b3653d6a6 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76 bgruening parents: 1 diff changeset	52 "$clf_metrics.infile2",
11 3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	53 c = c,
3fb4723f5033 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 8 diff changeset	54 c_option = column_option,
3 6d1b3653d6a6 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76 bgruening parents: 1 diff changeset	55 sep='\t',
8 f361aac67330 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: 3 diff changeset	56 header=header,
3 6d1b3653d6a6 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76 bgruening parents: 1 diff changeset	57 parse_dates=True
6d1b3653d6a6 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76 bgruening parents: 1 diff changeset	58 )
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	59
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	60 options = params["clf_metrics"].get("options", {})
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	61 print(options)
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	62 if options and options.get('average', '') == 'None':
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	63 options['average'] = None
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	64 metric = params["clf_metrics"]["selected_metric"]
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	65 metric_function = getattr(metrics, metric)
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	66 res = metric_function(y_t,y_p,**options)
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	67 with open("$outfile", 'w+') as out_file:
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	68 out_file.write( metric + ' : ' + '\n' + str(res) + '\n' )
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	69
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	70 ]]>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	71 </configfile>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	72 </configfiles>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	73 <inputs>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	74 <conditional name="clf_metrics">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	75 <param name="selected_metric" type="select" label="Metrics">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	76 <option value="accuracy_score" selected="true">Accuracy classification score</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	77 <option value="classification_report">Text report of the main classification metrics</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	78 <option value="f1_score">F1 score (aka balanced F-score or F-measure)</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	79 <option value="fbeta_score">F-beta score</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	80 <option value="hamming_loss">Average Hamming loss</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	81 <option value="jaccard_similarity_score">Jaccard similarity coefficient score</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	82 <option value="precision_recall_fscore_support">Compute precision, recall, F-measure and support for each class</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	83 <option value="precision_score">Precision</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	84 <option value="recall_score">Recall</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	85 <option value="zero_one_loss">Zero-one classification loss</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	86 <option value="auc">Area under the curve (AUC)</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	87 <option value="brier_score_loss">Brier score</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	88 <option value="matthews_corrcoef">Matthews correlation coefficient (MCC) for binary classes</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	89 <option value="confusion_matrix">Confusion matrix (evaluate the accuracy of a classification)</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	90 <option value="precision_recall_curve">Precision-recall pairs for different probability thresholds</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	91 <option value="roc_curve">Receiver operating characteristic (ROC)</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	92 <option value="hinge_loss">Average hinge loss (non-regularized)</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	93 <option value="log_loss">Log loss (aka logistic loss or cross-entropy loss)</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	94 <option value="average_precision_score">Average precision (AP) from prediction scores</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	95 <option value="roc_auc_score">Area Under the Curve (AUC) from prediction scores</option>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	96 </param>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	97 <when value="accuracy_score">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	98 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	99 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	100 <!--sample_weight-->
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	101 <param argument="normalize" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true"
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	102 label="Normalize" help="If false, returns the number of correctly classified samples. Otherwise, returns the fraction of correctly classified samples. "/>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	103 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	104 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	105 <when value="classification_report">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	106 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	107 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	108 <!--labels-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	109 <!--target_names-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	110 <!--sample_weight-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	111 <param argument="digits" type="integer" value="2" label="Number of digits for formatting output floating point values" help=""/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	112 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	113 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	114 <when value="f1_score">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	115 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	116 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	117 <!--labels-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	118 <!--sample_weight-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	119 <expand macro="pos_label" default_value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	120 <expand macro="average">
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	121 <option value="binary" selected="true">Only report results for the class specified by pos_label. This is applicable only if targets (y_{true,pred}) are binary. (binary)</option>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	122 </expand>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	123 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	124 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	125 <when value="fbeta_score">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	126 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	127 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	128 <expand macro="beta"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	129 <!--labels-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	130 <!--sample_weight-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	131 <expand macro="pos_label" default_value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	132 <expand macro="average">
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	133 <option value="binary" selected="true">Only report results for the class specified by pos_label. This is applicable only if targets (y_{true,pred}) are binary. (binary)</option>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	134 </expand>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	135 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	136 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	137 <when value="hamming_loss">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	138 <expand macro="clf_inputs"/>
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	139 <!--section name="options" title="Advanced Options" expanded="False">
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	140 <!- -classes- ->
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	141 </section-->
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	142 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	143 <when value="jaccard_similarity_score">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	144 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	145 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	146 <param argument="normalize" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" label="Normalize" help="If false, returns the sum of the Jaccard similarity coefficient over the sample set. Otherwise, returns the average of Jaccard similarity coefficient. "/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	147 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	148 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	149 <when value="precision_recall_fscore_support">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	150 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	151 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	152 <expand macro="beta"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	153 <!--labels-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	154 <!--sample_weight-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	155 <!--warn_for-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	156 <expand macro="pos_label" default_value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	157 <expand macro="average">
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	158 <option value="binary" selected="true">Only report results for the class specified by pos_label. Applicable only on binary classification. (binary)</option>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	159 </expand>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	160 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	161 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	162 <when value="precision_score">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	163 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	164 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	165 <!--labels-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	166 <!--sample_weight-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	167 <expand macro="pos_label" default_value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	168 <expand macro="average">
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	169 <option value="binary" selected="true">Only report results for the class specified by pos_label. This is applicable only if targets (y_{true,pred}) are binary. (binary)</option>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	170 </expand>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	171 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	172 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	173 <when value="recall_score">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	174 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	175 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	176 <!--labels-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	177 <!--sample_weight-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	178 <expand macro="pos_label" default_value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	179 <expand macro="average">
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	180 <option value="binary" selected="true">Only report results for the class specified by pos_label. This is applicable only if targets (y_{true,pred}) are binary. (binary)</option>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	181 </expand>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	182 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	183 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	184 <when value="zero_one_loss">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	185 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	186 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	187 <!--sample_weight-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	188 <param argument="normalize" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" label="Normalize" help="If false, returns the number of misclassifications. Otherwise, returns the fraction of misclassifications. "/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	189 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	190 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	191 <when value="auc">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	192 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	193 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	194 <param argument="reorder" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="false" label="Assume an ascending curve in the case of ties" help="If the curve is non-ascending, the result will be wrong. "/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	195 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	196 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	197 <when value="brier_score_loss">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	198 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	199 <section name="options" title="Advanced Options" expanded="False">
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	200 <!--weights-->
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	201 <expand macro="pos_label"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	202 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	203 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	204 <when value="matthews_corrcoef">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	205 <expand macro="clf_inputs"/>
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	206 <!--section name="options" title="Advanced Options" expanded="False">
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	207 </section-->
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	208 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	209 <when value="confusion_matrix">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	210 <expand macro="clf_inputs"/>
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	211 <!--section name="options" title="Advanced Options" expanded="False">
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	212 <!- -labels- ->
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	213 </section-->
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	214 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	215 <when value="precision_recall_curve">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	216 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	217 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	218 <expand macro="pos_label"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	219 <!--sample_weight-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	220 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	221 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	222 <when value="roc_curve">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	223 <expand macro="clf_inputs"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	224 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	225 <!--sample_weight-->
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	226 <expand macro="pos_label"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	227 <param argument="drop_intermediate" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" label=" Drop suboptimal thresholds" help="This is useful in order to create lighter ROC curves. "/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	228 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	229 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	230 <when value="hinge_loss">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	231 <expand macro="clf_inputs" multiple="true"/>
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	232 <!--section name="options" title="Advanced Options" expanded="False">
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	233 <!- -labels- ->
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	234 <!- -sample_weight- ->
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	235 </section-->
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	236 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	237 <when value="log_loss">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	238 <expand macro="clf_inputs" multiple="true"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	239 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	240 <!--sample_weight-->
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	241 <param argument="eps" type="float" value="1e-15" label="Clipping factor"
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	242 help="Log loss is undefined for p=0 or p=1, so probabilities are clipped to max(eps, min(1 - eps, p)). "/>
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	243 <param argument="normalize" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true"
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	244 label="Normalize" help="If true, returns the mean loss per sample. Otherwise, returns the sum of the per-sample losses. "/>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	245 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	246 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	247 <when value="average_precision_score">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	248 <expand macro="clf_inputs" multiple1="true" multiple="true"/>
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	249 <!-- section name="options" title="Advanced Options" expanded="False">
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	250 <!- -average='macro', sample_weight=None- ->
65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	251 </section-->
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	252 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	253 <when value="roc_auc_score">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	254 <expand macro="clf_inputs" multiple1="true" multiple="true"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	255 <section name="options" title="Advanced Options" expanded="False">
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	256 <expand macro="average">
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	257 <option value="macro" selected="true">Calculate metrics for each label, and find their unweighted mean. (macro)</option>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	258 </expand>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	259 </section>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	260 </when>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	261 </conditional>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	262 </inputs>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	263 <outputs>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	264 <data format="txt" name="outfile"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	265 </outputs>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	266 <tests>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	267 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	268 <param name="selected_metric" value="accuracy_score"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	269 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	270 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	271 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	272 <param name="col2" value="2"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	273 <output name="outfile" file="accuracy_score.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	274 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	275 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	276 <param name="selected_metric" value="classification_report"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	277 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	278 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	279 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	280 <param name="col2" value="2"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	281 <output name="outfile" file="classification_report.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	282 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	283 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	284 <param name="selected_metric" value="f1_score"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	285 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	286 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	287 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	288 <param name="col2" value="2"/>
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	289 <param name="average" value="micro"/>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	290 <output name="outfile" file="f1_score.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	291 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	292 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	293 <param name="selected_metric" value="fbeta_score"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	294 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	295 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	296 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	297 <param name="col2" value="2"/>
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	298 <param name="average" value="micro"/>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	299 <output name="outfile" file="fbeta_score.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	300 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	301 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	302 <param name="selected_metric" value="hamming_loss"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	303 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	304 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	305 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	306 <param name="col2" value="2"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	307 <output name="outfile" file="hamming_loss.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	308 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	309 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	310 <param name="selected_metric" value="jaccard_similarity_score"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	311 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	312 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	313 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	314 <param name="col2" value="2"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	315 <output name="outfile" file="jaccard_similarity_score.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	316 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	317 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	318 <param name="selected_metric" value="precision_recall_fscore_support"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	319 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	320 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	321 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	322 <param name="col2" value="2"/>
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	323 <param name="average" value="micro"/>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	324 <output name="outfile" file="precision_recall_fscore_support.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	325 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	326 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	327 <param name="selected_metric" value="precision_score"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	328 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	329 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	330 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	331 <param name="col2" value="2"/>
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	332 <param name="average" value="micro"/>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	333 <output name="outfile" file="precision_score.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	334 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	335 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	336 <param name="selected_metric" value="recall_score"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	337 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	338 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	339 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	340 <param name="col2" value="2"/>
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	341 <param name="average" value="micro"/>
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	342 <output name="outfile" file="recall_score.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	343 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	344 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	345 <param name="selected_metric" value="zero_one_loss"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	346 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	347 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	348 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	349 <param name="col2" value="2"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	350 <output name="outfile" file="zero_one_loss.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	351 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	352 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	353 <param name="selected_metric" value="auc"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	354 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	355 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	356 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	357 <param name="col2" value="2"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	358 <param name="reorder" value="true"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	359 <output name="outfile" file="auc.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	360 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	361 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	362 <param name="selected_metric" value="brier_score_loss"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	363 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	364 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	365 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	366 <param name="col2" value="3"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	367 <output name="outfile" file="brier_score_loss.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	368 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	369 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	370 <param name="selected_metric" value="matthews_corrcoef"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	371 <param name="infile1" value="y.tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	372 <param name="col1" value="6"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	373 <param name="infile2" value="y.tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	374 <param name="col2" value="7"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	375 <output name="outfile" file="matthews_corrcoef.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	376 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	377 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	378 <param name="selected_metric" value="confusion_matrix"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	379 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	380 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	381 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	382 <param name="col2" value="2"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	383 <output name="outfile" file="confusion_matrix.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	384 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	385 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	386 <param name="selected_metric" value="precision_recall_curve"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	387 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	388 <param name="col1" value="6"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	389 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	390 <param name="col2" value="7"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	391 <output name="outfile" file="precision_recall_curve.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	392 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	393 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	394 <param name="selected_metric" value="roc_curve"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	395 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	396 <param name="col1" value="6"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	397 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	398 <param name="col2" value="7"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	399 <output name="outfile" file="roc_curve.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	400 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	401 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	402 <param name="selected_metric" value="hinge_loss"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	403 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	404 <param name="col1" value="1"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	405 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	406 <param name="col2" value="8,9,10"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	407 <output name="outfile" file="hinge_loss.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	408 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	409 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	410 <param name="selected_metric" value="log_loss"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	411 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	412 <param name="col1" value="2"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	413 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	414 <param name="col2" value="3,4,5"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	415 <output name="outfile" file="log_loss.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	416 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	417 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	418 <param name="selected_metric" value="average_precision_score"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	419 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	420 <param name="col1" value="6"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	421 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	422 <param name="col2" value="7"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	423 <output name="outfile" file="average_precision_score.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	424 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	425 <test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	426 <param name="selected_metric" value="roc_auc_score"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	427 <param name="infile1" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	428 <param name="col1" value="6"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	429 <param name="infile2" value="y.tabular" ftype="tabular"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	430 <param name="col2" value="7"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	431 <output name="outfile" file="roc_auc_score.txt"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	432 </test>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	433 </tests>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	434 <help>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	435 <![CDATA[
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	436 What it does
1 65bd390f50ae planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9 bgruening parents: 0 diff changeset	437 This tool provides several loss, score, and utility functions to measure classification performance. Some metrics might require probability estimates of the positive class, confidence values, or binary decisions values. This tool is based on
0 8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	438 sklearn.metrics package.
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	439 For information about classification metric functions and their parameter settings please refer to `Scikit-learn classification metrics`_.
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	440
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	441 .. _`Scikit-learn classification metrics`: http://scikit-learn.org/stable/modules/model_evaluation.html#classification-metrics
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	442 ]]>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	443 </help>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	444 <expand macro="sklearn_citation"/>
8d7f8dc7c347 planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit a9f28163f0d2e808e49c43a6df5a040706e79991 bgruening parents: diff changeset	445 </tool>

Mercurial > repos > bgruening > sklearn_clf_metrics

annotate clf_metrics.xml @ 20:ba8a518a0b21 draft