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changeset 1:1e987317bf3a draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
author bgruening
date Tue, 15 Nov 2016 11:35:44 -0500
parents 22cb19d12fcc
children d0527124e909
files tool-data/salmon_indexes.loc.sample tool_data_table_conf.xml.sample
diffstat 2 files changed, 20 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/salmon_indexes.loc.sample	Tue Nov 15 11:35:44 2016 -0500
@@ -0,0 +1,14 @@
+# This is a sample file distributed with Galaxy that is used to define a
+# list of salmon indices, using three columns tab separated:
+#
+# salmon_index_id{tab}Salmon Index desciption{tab}/data/salmon_indexes/salmon_index_id/
+#
+# An index can be created with the following command:
+#
+# salmon index
+#     --transcripts your_transcripts.fasta
+#     --kmerSize 21
+#     --out /data/salmon_indexes/salmon_index_id/
+#     --threads 4
+#
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample	Tue Nov 15 11:35:44 2016 -0500
@@ -0,0 +1,6 @@
+<tables>
+    <table name="salmon_indexes" comment_char="#">
+        <columns>value, name, path</columns>
+        <file path="tool-data/salmon_indexes.loc" />
+    </table>
+</tables>