# HG changeset patch
# User bgruening
# Date 1479227744 18000
# Node ID 1e987317bf3a723697e2cdfe60db051cfe81e7a7
# Parent  22cb19d12fcccbf42c7591fff7c06f417bfcd390
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty

diff -r 22cb19d12fcc -r 1e987317bf3a tool-data/salmon_indexes.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/salmon_indexes.loc.sample	Tue Nov 15 11:35:44 2016 -0500
@@ -0,0 +1,14 @@
+# This is a sample file distributed with Galaxy that is used to define a
+# list of salmon indices, using three columns tab separated:
+#
+# salmon_index_id{tab}Salmon Index desciption{tab}/data/salmon_indexes/salmon_index_id/
+#
+# An index can be created with the following command:
+#
+# salmon index
+#     --transcripts your_transcripts.fasta
+#     --kmerSize 21
+#     --out /data/salmon_indexes/salmon_index_id/
+#     --threads 4
+#
+
diff -r 22cb19d12fcc -r 1e987317bf3a tool_data_table_conf.xml.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample	Tue Nov 15 11:35:44 2016 -0500
@@ -0,0 +1,6 @@
+<tables>
+    <table name="salmon_indexes" comment_char="#">
+        <columns>value, name, path</columns>
+        <file path="tool-data/salmon_indexes.loc" />
+    </table>
+</tables>