Mercurial > repos > bgruening > salmon
comparison tool-data/salmon_indexes.loc.sample @ 1:1e987317bf3a draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
| author | bgruening |
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| date | Tue, 15 Nov 2016 11:35:44 -0500 |
| parents | |
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| 0:22cb19d12fcc | 1:1e987317bf3a |
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| 1 # This is a sample file distributed with Galaxy that is used to define a | |
| 2 # list of salmon indices, using three columns tab separated: | |
| 3 # | |
| 4 # salmon_index_id{tab}Salmon Index desciption{tab}/data/salmon_indexes/salmon_index_id/ | |
| 5 # | |
| 6 # An index can be created with the following command: | |
| 7 # | |
| 8 # salmon index | |
| 9 # --transcripts your_transcripts.fasta | |
| 10 # --kmerSize 21 | |
| 11 # --out /data/salmon_indexes/salmon_index_id/ | |
| 12 # --threads 4 | |
| 13 # | |
| 14 |