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annotate tool-data/salmon_indexes.loc.sample @ 1:1e987317bf3a draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
author bgruening
date Tue, 15 Nov 2016 11:35:44 -0500
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1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
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1 # This is a sample file distributed with Galaxy that is used to define a
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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2 # list of salmon indices, using three columns tab separated:
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
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3 #
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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4 # salmon_index_id{tab}Salmon Index desciption{tab}/data/salmon_indexes/salmon_index_id/
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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5 #
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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6 # An index can be created with the following command:
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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7 #
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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8 # salmon index
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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9 # --transcripts your_transcripts.fasta
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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10 # --kmerSize 21
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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11 # --out /data/salmon_indexes/salmon_index_id/
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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12 # --threads 4
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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13 #
1e987317bf3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 49aa400dbbcab6ce76272d8b05df6981a5307783-dirty
bgruening
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