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annotate tool-data/sailfish_indexes.loc.sample @ 7:22d6517cb13d draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sailfish commit 03edb751808fef8bce744ebcbad5661a32373211
author bgruening
date Wed, 02 Nov 2016 09:20:15 -0400
parents 7e250f77d71d
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7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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1 # This is a sample file distributed with Galaxy that is used to define a
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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2 # list of sailfish indices, using three columns tab separated:
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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3 #
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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4 # sailfish_index_id{tab}Sailfish Index desciption{tab}/data/sailfish_indexes/sailfish_index_id/
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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5 #
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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6 # An index can be created with the following command:
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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7 #
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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8 # sailfish index
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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9 # --transcripts your_transcripts.fasta
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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10 # --kmerSize 21
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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11 # --out /data/sailfish_indexes/sailfish_index_id/
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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12 # --threads 4
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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13 #
7e250f77d71d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit 8c5c19a86870a02d3d0561958bac2ba71c64bf5f-dirty
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