Mercurial > repos > bgruening > rnaz
changeset 3:54229a841c63 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rnaz commit e02ab52f82468dc7751e6564bdf6e959bbba3a65
| author | bgruening |
|---|---|
| date | Wed, 01 Mar 2017 17:14:57 -0500 |
| parents | e5a88ce48e23 |
| children | 2b29668f0c3b |
| files | rnaz.xml test-data/rnaz_result2.fasta test-data/rnaz_test_input2.aln |
| diffstat | 3 files changed, 40 insertions(+), 0 deletions(-) [+] |
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--- a/rnaz.xml Mon Oct 24 02:46:03 2016 -0400 +++ b/rnaz.xml Wed Mar 01 17:14:57 2017 -0500 @@ -48,6 +48,10 @@ <param name="input" value="rnaz_input_trna.aln"/> <output name="outfile" file="rnaz_result_trna.fasta"/> </test> + <test> + <param name="input" value="rnaz_test_input2.aln"/> + <output name="outfile" file="rnaz_result2.fasta"/> + </test> </tests> <help> <![CDATA[
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rnaz_result2.fasta Wed Mar 01 17:14:57 2017 -0500 @@ -0,0 +1,24 @@ +>AP000397.1_114390-114319 +UGGAGUAUAGCCAAG--UGG--UAAGGCAU-CGGUUUUUGGUACCGGCAU---------GCAAAGGUUCGAAUCCUUUUACUCCAG +(((((((..(((...--.))--)...((((-((((.......))))..))---------))(((((.......)))))))))))). ( -22.00, z-score = -1.73, R) +>X03715.1_388-461 +CGGAAAGUAGCUUAGCUUGG--UAGAGCAC-UCGGUUUGGGACCGAGGGG---------UCGCAGGUUCGAAUCCUGUCUUUCCGA +(((((((..((((.((((..--..)))).(-((((((...))))))))))---------).(((((.......)))))))))))). ( -28.90, z-score = -2.35, R) +>U67517.1_7511-7582 +GCCGGGGUGGGGUAG--UGG--CCAUCCUGGGGGACUGUGGAUCCC-CUG---------ACCCGGGUUCAAUUCCCGGUCCCGGCC +.(((((((((.....--...--)))))))))(((((((.(((..((-(..---------....)))......)))))))))).... ( -35.60, z-score = -1.36, R) +>X99256.1_11558-11626 +GUAAACAUAGUUUA----AU--CAAAACAU-UAGAUUGUGAAUCUAACA----------AUAGAGGCUCGAAACCUCUUGCUUACC +((((.(((((((((----((--......))-))))))))).........----------..(((((.......)))))...)))). ( -13.90, z-score = -2.44, R) +>M10217.1_5910-5978 +AGUAAAGUCAGCUA----AA--AAAGCUUUUGGGCCCAU--ACCCCAAAC---------AUGUUGGUUAAACCCCUUCCUUUACUA +(((((((..((((.----..--..))))((((((.....--..)))))).---------...................))))))). ( -13.90, z-score = -2.40, R) +>AC021639.5_181586-181505 +GCAGUCGUGGCCGAGU---GGUUAAGGCGU-CUGACUCGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCG +((((((((((((....---)))))..((((-((((.......))))))((((...))))))(((((.......)))))))))))). ( -31.20, z-score = -1.31, R) +>AP000063.1_59179-59095 +GCGGGGGUGCCCGAGCCUGGCCAAAGGGGU-CGGGCUCAGGACCCGAUGGCGUAGGCCUGCGUGGGUUCAAAUCCCACCCCCCGCA +(((((((((...((((((((((.....)))-))))))).(((((((..(((....)))....)))))))......)).))))))). ( -52.80, z-score = -4.23, R) +>consensus +GCGAAAGUAGCCUAG__UGG__UAAGGCAU_CGGACUCUGGACCCGACAG_________ACGUAGGUUCGAAUCCUACCCCUCCCA +(((((((..(((.............)))...((((.......))))...............(((((.......)))))))))))). (-27.32 = -19.11 + -8.22)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rnaz_test_input2.aln Wed Mar 01 17:14:57 2017 -0500 @@ -0,0 +1,12 @@ +CLUSTAL W --- LocARNA 1.9.2pre2 + + + +AP000397.1_114390-114319 UGGAGUAUAGCCAAG--UGG--UAAGGCAU-CGGUUUUUGGUACCGGCAU---------GCAAAGGUUCGAAUCCUUUUACUCCAG +X03715.1_388-461 CGGAAAGUAGCUUAGCUUGG--UAGAGCAC-UCGGUUUGGGACCGAGGGG---------UCGCAGGUUCGAAUCCUGUCUUUCCGA +U67517.1_7511-7582 GCCGGGGUGGGGUAG--UGG--CCAUCCUGGGGGACUGUGGAUCCC-CUG---------ACCCGGGUUCAAUUCCCGGUCCCGGCC +X99256.1_11558-11626 GUAAACAUAGUUUA----AU--CAAAACAU-UAGAUUGUGAAUCUAACA----------AUAGAGGCUCGAAACCUCUUGCUUACC +M10217.1_5910-5978 AGUAAAGUCAGCUA----AA--AAAGCUUUUGGGCCCAU--ACCCCAAAC---------AUGUUGGUUAAACCCCUUCCUUUACUA +AC021639.5_181586-181505 GCAGUCGUGGCCGAGU---GGUUAAGGCGU-CUGACUCGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCG +AP000063.1_59179-59095 GCGGGGGUGCCCGAGCCUGGCCAAAGGGGU-CGGGCUCAGGACCCGAUGGCGUAGGCCUGCGUGGGUUCAAAUCCCACCCCCCGCA +