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1 <tool id="bg_text_file_with_recurring_lines" name="Create text file" version="0.1">
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2 <description>with recurring lines</description>
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3 <command>
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4
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5 #for $token in $token_set:
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6 #if str($token.repeat_select.repeat_select_opts) == 'user':
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7 times=#echo $token.repeat_select.times#;
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8 #else:
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9 times=`wc -l $token.repeat_select.infile | awk '{print $1}'`;
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10 #end if
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11
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12 yes -- "${token.line}" 2>/dev/null | head -n \$times >> $outfile;
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13 #end for
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14
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15 </command>
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16 <inputs>
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17
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18 <repeat name="token_set" title=" selection" min="1">
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19
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20 <param name="line" type="text" size="30" label="Characters to insert" help="Specify the characters that will be inserted X times in every line"/>
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21
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22 <conditional name="repeat_select">
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23 <param name="repeat_select_opts" type="select" label="Specify the number of iterations by">
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24 <option value="file">File (for each line in file)</option>
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25 <option value="user" selected="True">User defined number</option>
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26 </param>
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27 <when value="user">
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28 <param name="times" size="10" type="integer" value="10" min="1" label="How many times?"/>
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29 </when>
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30 <when value="file">
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31 <param name="infile" type="data" format="txt" label="Template file"
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32 help="For every line, the specified characters will be written once. That means X is the line-number from the given file."/>
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33 </when>
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34 </conditional>
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35 </repeat>
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36
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37 </inputs>
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38 <outputs>
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39 <data format="txt" name="outfile" from_work_dir="prediction" label="Generated text file"/>
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40 </outputs>
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41 <tests>
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42 <test>
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43 </test>
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44 </tests>
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45 <help>
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46
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47 .. class:: infomark
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48
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49 **What it does**
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50
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51 This tool creates a text file with recurring lines. You can specify a bunch of characters or entire sentences.
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52 The entire string will be printed X times separated by a line break. X can be either given by the use as a number or calculated by a given file.
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53 In case the user provides a file, the line number will be used as X.
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54
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55
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56 **References**
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57
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58 Bjoern A. Gruening: https://github.com/bgruening/galaxytools/
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59
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60 </help>
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61 </tool>
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